Human Gene TCEAL7 (uc004ekc.2)
  Description: Homo sapiens transcription elongation factor A (SII)-like 7 (TCEAL7), mRNA.
Transcript (Including UTRs)
   Position: hg19 chrX:102,585,114-102,587,251 Size: 2,138 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chrX:102,586,332-102,586,634 Size: 303 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:102,585,114-102,587,251)mRNA (may differ from genome)Protein (100 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtOMIMPubMedTreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TCAL7_HUMAN
DESCRIPTION: RecName: Full=Transcription elongation factor A protein-like 7; Short=TCEA-like protein 7; AltName: Full=Transcription elongation factor S-II protein-like 7;
FUNCTION: Plays a role in the negative regulation of NF-kappa-B signaling at the basal level by modulating transcriptional activity of NF-kappa-B on its target gene promoters. Associates with cyclin D1 promoter containing Myc E-box sequence and transcriptionally represses cyclin D1 expression. Regulates telomerase reverse transcriptase expression and telomerase activity in both ALT (alternative lengthening of telomeres)and telomerase-positive cell lines.
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Highly expressed in normal and fetal brain tissues, and weakly expressed in uterus and ovary. Down-regulated in epithelial ovarian, cervical, prostate, breast, brain and lung cancer cell lines and in brain and ovarian tumors.
SIMILARITY: Belongs to the TFS-II family. TFA subfamily.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): TCEAL7
CDC HuGE Published Literature: TCEAL7

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 80.56 RPKM in Brain - Hypothalamus
Total median expression: 899.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -92.80264-0.352 Picture PostScript Text
3' UTR -130.90617-0.212 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR021156 - TF_A-like/BEX-like
IPR010370 - TFA

Pfam Domains:
PF04538 - Brain expressed X-linked like family

ModBase Predicted Comparative 3D Structure on Q9BRU2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0050699 WW domain binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0032088 negative regulation of NF-kappaB transcription factor activity
GO:0045892 negative regulation of transcription, DNA-templated

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  AK094400 - Homo sapiens cDNA FLJ37081 fis, clone BRACE2016366, highly similar to Transcription elongation factor A protein-like 7.
BC016786 - Homo sapiens transcription elongation factor A (SII)-like 7, mRNA (cDNA clone MGC:23947 IMAGE:4102677), complete cds.
BC005988 - Homo sapiens transcription elongation factor A (SII)-like 7, mRNA (cDNA clone MGC:14789 IMAGE:3839180), complete cds.
AJ297363 - Homo sapiens partial mRNA for hypothetical protein (ORF1), RZPD clone MPMGp800C04260Q003.
JD144105 - Sequence 125129 from Patent EP1572962.
JD086716 - Sequence 67740 from Patent EP1572962.
AB464732 - Synthetic construct DNA, clone: pF1KB9797, Homo sapiens TCEAL7 gene for transcription elongation factor A (SII)-like 7, without stop codon, in Flexi system.
EU446610 - Synthetic construct Homo sapiens clone IMAGE:100069860; IMAGE:100011819; FLH258607.01L transcription elongation factor A (SII)-like 7 (TCEAL7) gene, encodes complete protein.
EU446623 - Synthetic construct Homo sapiens clone IMAGE:100070059; IMAGE:100011832; FLH258232.01L transcription elongation factor A (SII)-like 7 (TCEAL7) gene, encodes complete protein.
KJ894350 - Synthetic construct Homo sapiens clone ccsbBroadEn_03744 TCEAL7 gene, encodes complete protein.
CU677721 - Synthetic construct Homo sapiens gateway clone IMAGE:100018474 5' read TCEAL7 mRNA.
JD350561 - Sequence 331585 from Patent EP1572962.
JD052459 - Sequence 33483 from Patent EP1572962.
JD050749 - Sequence 31773 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B3KSV2, NM_152278, NP_689491, Q96AT4, Q9BRU2, TCAL7_HUMAN
UCSC ID: uc004ekc.2
RefSeq Accession: NM_152278
Protein: Q9BRU2 (aka TCAL7_HUMAN)
CCDS: CCDS14506.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_152278.3
exon count: 3CDS single in 3' UTR: no RNA size: 1213
ORF size: 303CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 806.00frame shift in genome: no % Coverage: 97.61
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.