Human Gene ACBD7 (uc010qby.1) Description and Page Index
  Description: Homo sapiens acyl-CoA binding domain containing 7 (ACBD7), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr10:15,057,071-15,130,775 Size: 73,705 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr10:15,057,357-15,060,131 Size: 2,775 Coding Exon Count: 4 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:15,057,071-15,130,775)mRNA (may differ from genome)Protein (133 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMGIPubMedStanford SOURCE
TreefamUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.26 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 46.38 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -81.90309-0.265 Picture PostScript Text
3' UTR -113.80286-0.398 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on B7Z2W2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK295169 - Homo sapiens cDNA FLJ52263 complete cds, highly similar to Artemis protein (EC 3.1.-.-).
KJ894555 - Synthetic construct Homo sapiens clone ccsbBroadEn_03949 DCLRE1C gene, encodes complete protein.
CU679259 - Synthetic construct Homo sapiens gateway clone IMAGE:100022485 5' read DCLRE1C mRNA.
AK095538 - Homo sapiens cDNA FLJ38219 fis, clone FCBBF2001427, highly similar to Acyl-CoA-binding domain-containing protein 7.
BC029526 - Homo sapiens acyl-Coenzyme A binding domain containing 7, mRNA (cDNA clone MGC:33893 IMAGE:5301753), complete cds.
JF432125 - Synthetic construct Homo sapiens clone IMAGE:100073264 acyl-Coenzyme A binding domain containing 7 (ACBD7) gene, encodes complete protein.
KJ900754 - Synthetic construct Homo sapiens clone ccsbBroadEn_10148 ACBD7 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: AK295169, B7Z2W2, B7Z2W2_HUMAN
UCSC ID: uc010qby.1
RefSeq Accession: NM_001039844
Protein: B7Z2W2

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK295169.1
exon count: 8CDS single in 3' UTR: no RNA size: 998
ORF size: 402CDS single in intron: no Alignment % ID: 99.90
txCdsPredict score: 743.00frame shift in genome: no % Coverage: 99.90
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.