Human Gene KCNK4-TEX40 (uc009ypm.3)
Description: Homo sapiens testis expressed 40 (KCNK4-TEX40), mRNA.
Transcript (Including UTRs)
Position: hg19 chr11:64,066,818-64,072,239 Size: 5,422 Total Exon Count: 5 Strand: +
Coding Region
Position: hg19 chr11:64,067,883-64,072,118 Size: 4,236 Coding Exon Count: 5
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: CK020_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C11orf20;
FUNCTION: May be involved in late spermatogenesis (By similarity).
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
ModBase Predicted Comparative 3D Structure on Q9NTU4
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC067791 - Homo sapiens potassium channel, subfamily K, member 4, mRNA (cDNA clone IMAGE:30345701), with apparent retained intron.AF259500 - Homo sapiens two pore K+ channel KT4.1a mRNA, complete cds.AK296021 - Homo sapiens cDNA FLJ56952 complete cds.AF247042 - Homo sapiens tandem pore domain potassium channel TRAAK (KCNK4) mRNA, complete cds.BC033577 - Homo sapiens potassium channel, subfamily K, member 4, mRNA (cDNA clone IMAGE:5200313).AF259501 - Homo sapiens two pore K+ channel KT4.1b mRNA, complete cds.BC110327 - Homo sapiens potassium channel, subfamily K, member 4, mRNA (cDNA clone IMAGE:5728354), partial cds.AF248242 - Homo sapiens 2P domain potassium channel (KCNK4) mRNA, complete cds.EU978935 - Homo sapiens K2P4.1 potassium channel (KCNK4) mRNA, complete cds.BC160128 - Synthetic construct Homo sapiens clone IMAGE:100064160, MGC:193243 potassium channel, subfamily K, member 4 (KCNK4) mRNA, encodes complete protein.JD053443 - Sequence 34467 from Patent EP1572962.JD125353 - Sequence 106377 from Patent EP1572962.JD412946 - Sequence 393970 from Patent EP1572962.JD439586 - Sequence 420610 from Patent EP1572962.JD356045 - Sequence 337069 from Patent EP1572962.JD218287 - Sequence 199311 from Patent EP1572962.JD461919 - Sequence 442943 from Patent EP1572962.JD140222 - Sequence 121246 from Patent EP1572962.JD193356 - Sequence 174380 from Patent EP1572962.JD560859 - Sequence 541883 from Patent EP1572962.JD544566 - Sequence 525590 from Patent EP1572962.JD221818 - Sequence 202842 from Patent EP1572962.JD179179 - Sequence 160203 from Patent EP1572962.JD158032 - Sequence 139056 from Patent EP1572962.AL117564 - Homo sapiens mRNA; cDNA DKFZp566E164 (from clone DKFZp566E164).JD234732 - Sequence 215756 from Patent EP1572962.AM392988 - Synthetic construct Homo sapiens clone IMAGE:100001694 for hypothetical protein (DKFZP566E164 gene).AB590987 - Synthetic construct DNA, clone: pFN21AE1116, Homo sapiens C11orf20 gene for chromosome 11 open reading frame 20, without stop codon, in Flexi system.JD451067 - Sequence 432091 from Patent EP1572962.DQ578775 - Homo sapiens piRNA piR-46887, complete sequence.JD476064 - Sequence 457088 from Patent EP1572962.JD381823 - Sequence 362847 from Patent EP1572962.JD044443 - Sequence 25467 from Patent EP1572962.JD168028 - Sequence 149052 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: C11orf20, CK020_HUMAN, NM_001039496, NP_001034585, Q9NTU4, TEX40UCSC ID: uc009ypm.3RefSeq Accession: NM_001039496
Protein: Q9NTU4
(aka CK020_HUMAN)
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001039496.1
exon count:
5 CDS single in 3' UTR:
no
RNA size:
764
ORF size:
603 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
667.00 frame shift in genome:
no
% Coverage:
97.38
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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