Human Gene CTAGE9 (uc011ece.2) Description and Page Index
  Description: Homo sapiens CTAGE family, member 9 (CTAGE9), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr6:132,029,581-132,032,157 Size: 2,577 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr6:132,029,824-132,032,157 Size: 2,334 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr6:132,029,581-132,032,157)mRNA (may differ from genome)Protein (777 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsHGNCLynx
MGIneXtProtPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
DESCRIPTION: RecName: Full=Cutaneous T-cell lymphoma-associated antigen 9; Short=Protein cTAGE-9;
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein (Potential).
SIMILARITY: Belongs to the cTAGE family.

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.12 RPKM in Testis
Total median expression: 5.26 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -55.14243-0.227 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on A4FU28
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane

-  Descriptions from all associated GenBank mRNAs
  JD194020 - Sequence 175044 from Patent EP1572962.
BC101322 - Homo sapiens CTAGE family member, mRNA (cDNA clone IMAGE:40024900), partial cds.
JD046096 - Sequence 27120 from Patent EP1572962.
JD095294 - Sequence 76318 from Patent EP1572962.
JD116241 - Sequence 97265 from Patent EP1572962.
JD296553 - Sequence 277577 from Patent EP1572962.
JD544773 - Sequence 525797 from Patent EP1572962.
JD133150 - Sequence 114174 from Patent EP1572962.
JD084573 - Sequence 65597 from Patent EP1572962.
JD073231 - Sequence 54255 from Patent EP1572962.
JD039832 - Sequence 20856 from Patent EP1572962.
JD302809 - Sequence 283833 from Patent EP1572962.
JD040611 - Sequence 21635 from Patent EP1572962.
DQ601011 - Homo sapiens piRNA piR-39077, complete sequence.
JD411021 - Sequence 392045 from Patent EP1572962.
JD239797 - Sequence 220821 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A4FU28, CTGE9_HUMAN, NM_001145659, NP_001139131
UCSC ID: uc011ece.2
RefSeq Accession: NM_001145659
Protein: A4FU28 (aka CTGE9_HUMAN)
CCDS: CCDS47475.1

-  Gene Model Information
category: coding nonsense-mediated-decay: no RNA accession: NM_001145659.1
exon count: 1CDS single in 3' UTR: no RNA size: 2577
ORF size: 2334CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2534.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.