Human Gene ELK2AP (uc001ysb.2) Description and Page Index
  Description: Homo sapiens ELK2A, member of ETS oncogene family, pseudogene (ELK2AP), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr14:106,134,458-106,139,163 Size: 4,706 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr14:106,134,586-106,135,267 Size: 682 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:106,134,458-106,139,163)mRNA (may differ from genome)Protein (194 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsH-INVHGNCLynx
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 135.07 RPKM in Spleen
Total median expression: 221.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -563.851326-0.425 Picture PostScript Text
3' UTR -41.64128-0.325 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC016381 - Homo sapiens immunoglobulin heavy constant mu, mRNA (cDNA clone IMAGE:4688865).
HM995607 - Homo sapiens isolate P3_Agg_1.2.8 immunoglobulin variable region mRNA, partial cds.
HM774189 - Homo sapiens clone P05G301 immunoglobulin gamma 3 heavy chain variable region-like mRNA, partial sequence.
HM774295 - Homo sapiens clone P07G111 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM995938 - Homo sapiens isolate P3_Inf_8.1.5 immunoglobulin variable region mRNA, partial cds.
MK752513 - UNVERIFIED: Homo sapiens clone DB5G anti-DBPII antibody gamma chain variable region mRNA sequence.
AK129637 - Homo sapiens cDNA FLJ26126 fis, clone TMS02464, highly similar to Ig gamma-1 chain C region.
X81696 - H.sapiens rearranged IgG VHIII-D-JH-CH3 region.
HM774383 - Homo sapiens clone P08G218 immunoglobulin gamma 2 heavy chain variable region mRNA, partial cds.
HM774392 - Homo sapiens clone P08G227 immunoglobulin gamma 2 heavy chain variable region mRNA, partial cds.
HM774107 - Homo sapiens clone P04G201 immunoglobulin gamma 2 heavy chain variable region mRNA, partial cds.
HM995065 - Homo sapiens isolate P2_Agg_5.1.12 immunoglobulin variable region mRNA, partial cds.
HM995728 - Homo sapiens isolate P3_Ass_3.2.1 immunoglobulin variable region mRNA, partial cds.
HM995365 - Homo sapiens isolate P2_Ass_1.7.6 immunoglobulin variable region mRNA, partial cds.
HM995861 - Homo sapiens isolate P3_Inf_1.8.7 immunoglobulin variable region mRNA, partial cds.
HM995776 - Homo sapiens isolate P3_Ass_3.5.8 immunoglobulin variable region mRNA, partial cds.
HM774674 - Homo sapiens clone P11G143 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774025 - Homo sapiens clone P03G120 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774529 - Homo sapiens clone P10G122 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774561 - Homo sapiens clone P10G157 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774196 - Homo sapiens clone P06G104 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774979 - Homo sapiens clone P14G125 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774211 - Homo sapiens clone P06G120 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774435 - Homo sapiens clone P09G123 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774159 - Homo sapiens clone P05G112 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774096 - Homo sapiens clone P04G128_6i immunoglobulin gamma 1 heavy chain variable region-like mRNA, partial sequence.
HM774432 - Homo sapiens clone P09G120 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM774868 - Homo sapiens clone P13G127 immunoglobulin gamma 1 heavy chain variable region mRNA, partial cds.
HM995655 - Homo sapiens isolate P3_Agg_5.2.1 immunoglobulin variable region mRNA, partial cds.
HM996312 - Homo sapiens isolate P6_PC075_HC immunoglobulin variable region mRNA, partial cds.
AF103217 - Homo sapiens clone N23 immunoglobulin heavy chain variable region mRNA, partial cds.
KX986455 - Homo sapiens clone 241GH_D3 immunoglobulin heavy chain variable region mRNA, partial cds.
KX986457 - Homo sapiens clone 241GH_D7 immunoglobulin heavy chain variable region mRNA, partial cds.
CU676945 - Synthetic construct Homo sapiens gateway clone IMAGE:100019552 5' read IGHG1 mRNA.
BC031259 - Homo sapiens ELK2, member of ETS oncogene family, pseudogene 1, mRNA (cDNA clone IMAGE:5272595).
JD022093 - Sequence 3117 from Patent EP1572962.
JD033333 - Sequence 14357 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC031259, uc001ysb.1
UCSC ID: uc001ysb.2
RefSeq Accession: NR_046211

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC031259.1
exon count: 4CDS single in 3' UTR: no RNA size: 2057
ORF size: 585CDS single in intron: no Alignment % ID: 99.95
txCdsPredict score: 653.50frame shift in genome: no % Coverage: 99.08
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 873# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.