Human Gene TMEM50B (uc002yrs.2) Description and Page Index
  Description: Homo sapiens transmembrane protein 50B (TMEM50B), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr21:34,804,793-34,852,316 Size: 47,524 Total Exon Count: 9 Strand: -


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:34,804,793-34,852,316)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneNetworkH-INVHGNC
LynxOMIMPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 57.15 RPKM in Thyroid
Total median expression: 1078.59 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BX537378 - Homo sapiens mRNA; cDNA DKFZp686C2482 (from clone DKFZp686C2482); complete cds.
AK129657 - Homo sapiens cDNA FLJ26146 fis, clone ADG00290.
AL355685 - Homo sapiens EST from clone 491476, full insert.
AY358634 - Homo sapiens clone DNA23322 C21ORF4 (UNQ167) mRNA, complete cds.
BC000569 - Homo sapiens transmembrane protein 50B, mRNA (cDNA clone MGC:645 IMAGE:3342648), complete cds.
JD024784 - Sequence 5808 from Patent EP1572962.
AK310701 - Homo sapiens cDNA, FLJ17743.
AK309977 - Homo sapiens cDNA, FLJ17019.
AF086280 - Homo sapiens full length insert cDNA clone ZD45F12.
AF045606 - Homo sapiens C21orf4 mRNA, complete cds.
JD091316 - Sequence 72340 from Patent EP1572962.
AY820138 - Homo sapiens HCV p7-transregulated protein 3 mRNA, complete cds.
AK311870 - Homo sapiens cDNA, FLJ92136.
KJ890802 - Synthetic construct Homo sapiens clone ccsbBroadEn_00196 TMEM50B gene, encodes complete protein.
DQ286229 - Homo sapiens HCV p7-transregulated protein 3 transcript variant 1 mRNA, complete cds, alternatively spliced.
DQ656043 - Homo sapiens clone UGLsupplD, mRNA sequence.
JD478854 - Sequence 459878 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_006134, NR_040016
UCSC ID: uc002yrs.2
RefSeq Accession: NM_006134

-  Gene Model Information
 
category: antisense nonsense-mediated-decay: yes RNA accession: NR_040016.1
exon count: 9CDS single in 3' UTR: no RNA size: 3127
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 740.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.