Human Gene RFPL1S (uc003afm.2) Description and Page Index
  Description: Homo sapiens RFPL1 antisense RNA 1 (RFPL1S), antisense RNA.
Transcript (Including UTRs)
   Position: hg19 chr22:29,833,004-29,838,118 Size: 5,115 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:29,833,004-29,838,118)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneNetworkHGNCLynx
OMIMPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.72 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 87.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AJ010230 - Homo sapiens RET finger protein-like 1 antisense transcript, partial.
JD452547 - Sequence 433571 from Patent EP1572962.
JD307029 - Sequence 288053 from Patent EP1572962.
JD170165 - Sequence 151189 from Patent EP1572962.
JD529656 - Sequence 510680 from Patent EP1572962.
JD430447 - Sequence 411471 from Patent EP1572962.
JD425040 - Sequence 406064 from Patent EP1572962.
JD401565 - Sequence 382589 from Patent EP1572962.
JD194344 - Sequence 175368 from Patent EP1572962.
JD401564 - Sequence 382588 from Patent EP1572962.
JD170164 - Sequence 151188 from Patent EP1572962.
JD170166 - Sequence 151190 from Patent EP1572962.
JD238047 - Sequence 219071 from Patent EP1572962.
JD194633 - Sequence 175657 from Patent EP1572962.
JD537276 - Sequence 518300 from Patent EP1572962.
JD379626 - Sequence 360650 from Patent EP1572962.
JD120538 - Sequence 101562 from Patent EP1572962.
BC027468 - Homo sapiens cDNA clone IMAGE:4157339.
JD561343 - Sequence 542367 from Patent EP1572962.
JD481350 - Sequence 462374 from Patent EP1572962.
CR456561 - Homo sapiens RFPL1S full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.RFPL1S).
CU013162 - Homo sapiens RFPL1S, mRNA (cDNA clone IMAGE:100000515), complete cds, with stop codon, in Gateway system.
CU013450 - Homo sapiens RFPL1S, mRNA (cDNA clone IMAGE:100000419), complete cds, without stop codon, in Gateway system.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_002727
UCSC ID: uc003afm.2
RefSeq Accession: NR_002727

-  Gene Model Information
 
category: antisense nonsense-mediated-decay: no RNA accession: NR_002727.2
exon count: 1CDS single in 3' UTR: no RNA size: 5125
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 542.00frame shift in genome: no % Coverage: 99.80
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.