Human Gene NAA30 (uc001xcx.4) Description and Page Index
  Description: Homo sapiens N(alpha)-acetyltransferase 30, NatC catalytic subunit (NAA30), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr14:57,857,271-57,879,466 Size: 22,196 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr14:57,857,676-57,876,234 Size: 18,559 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:57,857,271-57,879,466)mRNA (may differ from genome)Protein (362 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtOMIMPubMedReactomeStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: NAA30_HUMAN
DESCRIPTION: RecName: Full=N-alpha-acetyltransferase 30; EC=2.3.1.88; AltName: Full=N-acetyltransferase 12; AltName: Full=N-acetyltransferase MAK3 homolog; AltName: Full=NatC catalytic subunit;
FUNCTION: Catalytic subunit of the N-terminal acetyltransferase C (NatC) complex. Catalyzes acetylation of the N-terminal methionine residues of peptides beginning with Met-Leu-Ala and Met-Leu-Gly. Necessary for the lysosomal localization and function of ARL8B.
CATALYTIC ACTIVITY: Acetyl-CoA + peptide = N(alpha)-acetylpeptide + CoA.
SUBUNIT: Component of the N-terminal acetyltransferase C (NatC) complex, which is composed of NAA35, LSMD1 and NAA30.
SUBCELLULAR LOCATION: Cytoplasm.
SIMILARITY: Belongs to the acetyltransferase family. MAK3 subfamily.
SIMILARITY: Contains 1 N-acetyltransferase domain.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.55 RPKM in Testis
Total median expression: 190.75 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -74.90154-0.486 Picture PostScript Text
3' UTR -818.223232-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016181 - Acyl_CoA_acyltransferase
IPR000182 - GNAT_dom

Pfam Domains:
PF00583 - Acetyltransferase (GNAT) family
PF08445 - FR47-like protein
PF13508 - Acetyltransferase (GNAT) domain
PF13673 - Acetyltransferase (GNAT) domain

SCOP Domains:
55729 - Acyl-CoA N-acyltransferases (Nat)

ModBase Predicted Comparative 3D Structure on Q147X3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserGenome BrowserGenome Browser
Gene Details  Gene DetailsGene DetailsGene Details
Gene Sorter  Gene SorterGene SorterGene Sorter
  EnsemblFlyBaseWormBaseSGD
  Protein SequenceProtein SequenceProtein SequenceProtein Sequence
  AlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004596 peptide alpha-N-acetyltransferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0016746 transferase activity, transferring acyl groups

Biological Process:
GO:0017196 N-terminal peptidyl-methionine acetylation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0031417 NatC complex
GO:0005844 polysome


-  Descriptions from all associated GenBank mRNAs
  KJ895374 - Synthetic construct Homo sapiens clone ccsbBroadEn_04768 NAA30 gene, encodes complete protein.
KJ903699 - Synthetic construct Homo sapiens clone ccsbBroadEn_13093 NAA30 gene, encodes complete protein.
LF210039 - JP 2014500723-A/17542: Polycomb-Associated Non-Coding RNAs.
AK296372 - Homo sapiens cDNA FLJ50785 complete cds.
AK092674 - Homo sapiens cDNA FLJ35355 fis, clone PUAEN2000152, moderately similar to N-terminal acetyltransferase C complexcatalytic subunit MAK3 (EC 2.3.1.88).
AX747665 - Sequence 1190 from Patent EP1308459.
AK304257 - Homo sapiens cDNA FLJ55379 complete cds, moderately similar to N-terminal acetyltransferase C complex catalytic subunit MAK3 (EC 2.3.1.88).
AK307348 - Homo sapiens cDNA, FLJ97296.
BC118589 - Homo sapiens N-acetyltransferase 12 (GCN5-related, putative), mRNA (cDNA clone MGC:141885 IMAGE:40085064), complete cds.
BC122557 - Homo sapiens N-acetyltransferase 12 (GCN5-related, putative), mRNA (cDNA clone MGC:141884 IMAGE:40085054), complete cds.
JD180866 - Sequence 161890 from Patent EP1572962.
JD542114 - Sequence 523138 from Patent EP1572962.
BX648700 - Homo sapiens mRNA; cDNA DKFZp686I0739 (from clone DKFZp686I0739).
JD427460 - Sequence 408484 from Patent EP1572962.
BC048983 - Homo sapiens N-acetyltransferase 12, mRNA (cDNA clone IMAGE:5259876).
JD111607 - Sequence 92631 from Patent EP1572962.
JD198663 - Sequence 179687 from Patent EP1572962.
JD358850 - Sequence 339874 from Patent EP1572962.
JD299611 - Sequence 280635 from Patent EP1572962.
LF334318 - JP 2014500723-A/141821: Polycomb-Associated Non-Coding RNAs.
JD509027 - Sequence 490051 from Patent EP1572962.
JD530647 - Sequence 511671 from Patent EP1572962.
LF334319 - JP 2014500723-A/141822: Polycomb-Associated Non-Coding RNAs.
AK024885 - Homo sapiens cDNA: FLJ21232 fis, clone COL00752.
JD530892 - Sequence 511916 from Patent EP1572962.
JD235308 - Sequence 216332 from Patent EP1572962.
LF334320 - JP 2014500723-A/141823: Polycomb-Associated Non-Coding RNAs.
JD066371 - Sequence 47395 from Patent EP1572962.
JD092566 - Sequence 73590 from Patent EP1572962.
AK025749 - Homo sapiens cDNA: FLJ22096 fis, clone HEP16953.
JD354613 - Sequence 335637 from Patent EP1572962.
JD243046 - Sequence 224070 from Patent EP1572962.
JD506374 - Sequence 487398 from Patent EP1572962.
JD348680 - Sequence 329704 from Patent EP1572962.
LF334321 - JP 2014500723-A/141824: Polycomb-Associated Non-Coding RNAs.
MA445616 - JP 2018138019-A/17542: Polycomb-Associated Non-Coding RNAs.
MA569895 - JP 2018138019-A/141821: Polycomb-Associated Non-Coding RNAs.
MA569896 - JP 2018138019-A/141822: Polycomb-Associated Non-Coding RNAs.
MA569897 - JP 2018138019-A/141823: Polycomb-Associated Non-Coding RNAs.
MA569898 - JP 2018138019-A/141824: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q147X3 (Reactome details) participates in the following event(s):

R-HSA-6814090 NatC acetylates ARFFRP1
R-HSA-6811440 Retrograde transport at the Trans-Golgi-Network
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: C14orf35, MAK3, NAA30_HUMAN, NAT12, NM_001011713, NP_001011713, Q0IIN2, Q147X3
UCSC ID: uc001xcx.4
RefSeq Accession: NM_001011713
Protein: Q147X3 (aka NAA30_HUMAN)
CCDS: CCDS32088.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001011713.2
exon count: 5CDS single in 3' UTR: no RNA size: 4490
ORF size: 1089CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2378.00frame shift in genome: no % Coverage: 99.67
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.