Human Gene LOC728613 (uc003jcp.4) Description and Page Index
  Description: Homo sapiens programmed cell death 6 pseudogene (LOC728613), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr5:1,597,672-1,634,120 Size: 36,449 Total Exon Count: 7 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:1,597,672-1,634,120)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneNetworkLynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.85 RPKM in Testis
Total median expression: 150.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC045555 - Homo sapiens programmed cell death 6 pseudogene, mRNA (cDNA clone IMAGE:5313945).
JD219918 - Sequence 200942 from Patent EP1572962.
BC053586 - Homo sapiens programmed cell death 6 pseudogene, mRNA (cDNA clone IMAGE:5240763).
BC044220 - Homo sapiens programmed cell death 6, mRNA (cDNA clone IMAGE:5744339), partial cds.
BC014604 - Homo sapiens programmed cell death 6 pseudogene, mRNA (cDNA clone IMAGE:4823101).
AK311210 - Homo sapiens cDNA, FLJ18252.
AK308990 - Homo sapiens cDNA, FLJ99031.
BC067863 - Homo sapiens programmed cell death 6 pseudogene, mRNA (cDNA clone IMAGE:5265246).
BC020552 - Homo sapiens programmed cell death 6 pseudogene, mRNA (cDNA clone IMAGE:2901119), with apparent retained intron.
BC019918 - Homo sapiens programmed cell death 6 pseudogene, mRNA (cDNA clone IMAGE:4992672), with apparent retained intron.
AK311251 - Homo sapiens cDNA, FLJ18293.
AK315872 - Homo sapiens cDNA, FLJ79521 complete cds.
AK307076 - Homo sapiens cDNA, FLJ97024.
JD308090 - Sequence 289114 from Patent EP1572962.
JD435391 - Sequence 416415 from Patent EP1572962.
JD308089 - Sequence 289113 from Patent EP1572962.
JD529902 - Sequence 510926 from Patent EP1572962.
JD461247 - Sequence 442271 from Patent EP1572962.
JD406665 - Sequence 387689 from Patent EP1572962.
JD523337 - Sequence 504361 from Patent EP1572962.
JD045125 - Sequence 26149 from Patent EP1572962.
JD100577 - Sequence 81601 from Patent EP1572962.
JD452293 - Sequence 433317 from Patent EP1572962.
JD056113 - Sequence 37137 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC053586
UCSC ID: uc003jcp.4
RefSeq Accession: NR_003713

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC053586.1
exon count: 7CDS single in 3' UTR: no RNA size: 2301
ORF size: 0CDS single in intron: no Alignment % ID: 99.96
txCdsPredict score: 79.00frame shift in genome: no % Coverage: 98.52
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 2070# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.