The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on P32969
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
AB062431 - Homo sapiens OK/SW-cl.103 mRNA for ribosomal protein L9, complete cds. BC004156 - Homo sapiens ribosomal protein L9, mRNA (cDNA clone MGC:2418 IMAGE:2961026), complete cds. BC004206 - Homo sapiens ribosomal protein L9, mRNA (cDNA clone MGC:4066 IMAGE:2961026), complete cds. BC031906 - Homo sapiens ribosomal protein L9, mRNA (cDNA clone MGC:29903 IMAGE:4996986), complete cds. D14531 - Homo sapiens mRNA for rat ribosomal protein L9 homologue, complete cds. U21138 - Human ribosomal protein L9 mRNA, complete cds. BC000483 - Homo sapiens ribosomal protein L9, mRNA (cDNA clone MGC:8704 IMAGE:2964733), complete cds. AK130966 - Homo sapiens cDNA FLJ27456 fis, clone TST99901, highly similar to 60S ribosomal protein L9. AK303908 - Homo sapiens cDNA FLJ52179 complete cds, highly similar to 60S ribosomal protein L9. BC066318 - Homo sapiens ribosomal protein L9, mRNA (cDNA clone MGC:87207 IMAGE:5277491), complete cds. LF210608 - JP 2014500723-A/18111: Polycomb-Associated Non-Coding RNAs. AY320412 - Homo sapiens nasopharyngeal carcinoma-associated antigen NPC-A-16 mRNA, complete cds. LF208489 - JP 2014500723-A/15992: Polycomb-Associated Non-Coding RNAs. AK312241 - Homo sapiens cDNA, FLJ92535, Homo sapiens ribosomal protein L9 (RPL9), mRNA. DQ892727 - Synthetic construct clone IMAGE:100005357; FLH189153.01X; RZPDo839C0274D ribosomal protein L9 (RPL9) gene, encodes complete protein. DQ892959 - Synthetic construct Homo sapiens clone IMAGE:100005589; FLH263532.01X; RZPDo839A0577D ribosomal protein L9 (RPL9) gene, encodes complete protein. DQ895974 - Synthetic construct Homo sapiens clone IMAGE:100010434; FLH189149.01L; RZPDo839C0264D ribosomal protein L9 (RPL9) gene, encodes complete protein. AB529031 - Synthetic construct DNA, clone: pF1KB3429, Homo sapiens RPL9 gene for ribosomal protein L9, without stop codon, in Flexi system. MA446185 - JP 2018138019-A/18111: Polycomb-Associated Non-Coding RNAs. MA444066 - JP 2018138019-A/15992: Polycomb-Associated Non-Coding RNAs. LF339234 - JP 2014500723-A/146737: Polycomb-Associated Non-Coding RNAs. JD190153 - Sequence 171177 from Patent EP1572962. LF376973 - JP 2014500723-A/184476: Polycomb-Associated Non-Coding RNAs. JD019249 - Sequence 273 from Patent EP1572962. JD035736 - Sequence 16760 from Patent EP1572962. LF358632 - JP 2014500723-A/166135: Polycomb-Associated Non-Coding RNAs. DQ592209 - Homo sapiens piRNA piR-59321, complete sequence. LF376972 - JP 2014500723-A/184475: Polycomb-Associated Non-Coding RNAs. LF338298 - JP 2014500723-A/145801: Polycomb-Associated Non-Coding RNAs. MA574811 - JP 2018138019-A/146737: Polycomb-Associated Non-Coding RNAs. MA612550 - JP 2018138019-A/184476: Polycomb-Associated Non-Coding RNAs. MA594209 - JP 2018138019-A/166135: Polycomb-Associated Non-Coding RNAs. MA612549 - JP 2018138019-A/184475: Polycomb-Associated Non-Coding RNAs. MA573875 - JP 2018138019-A/145801: Polycomb-Associated Non-Coding RNAs. DL492354 - Novel nucleic acids. DL490843 - Novel nucleic acids. D28399 - Homo sapiens mRNA for ribosomal protein L9, 5'UTR region.
Biochemical and Signaling Pathways
Reactome (by CSHL, EBI, and GO)
Protein P32969 (Reactome details) participates in the following event(s):
R-HSA-72672 The 60S subunit joins the translation initiation complex R-HSA-156826 Dissociation of L13a from the 60s ribosomal subunit R-HSA-72673 Release of 40S and 60S subunits from the 80S ribosome R-HSA-72671 eIF5B:GTP is hydrolyzed and released R-HSA-156907 Aminoacyl-tRNA binds to the ribosome at the A-site R-HSA-2408529 Sec-tRNA(Sec):EEFSEC:GTP binds to 80S Ribosome R-HSA-141691 GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex R-HSA-156915 Translocation of ribosome by 3 bases in the 3' direction R-HSA-141671 Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex R-HSA-156912 Peptide transfer from P-site tRNA to the A-site tRNA R-HSA-927832 UPF1 binds an mRNP with a termination codon preceding an Exon Junction Complex R-HSA-927789 Formation of UPF1:eRF3 complex on mRNA with a premature termination codon and no Exon Junction Complex R-HSA-1799332 Nascent polypeptide:mRNA:ribosome complex binds signal recognition particle (SRP) R-HSA-156923 Hydrolysis of eEF1A:GTP R-HSA-5333615 80S:Met-tRNAi:mRNA:SECISBP2:Sec-tRNA(Sec):EEFSEC:GTP is hydrolysed to 80S:Met-tRNAi:mRNA:SECISBP2:Sec and EEFSEC:GDP by EEFSEC R-HSA-141673 GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex R-HSA-927889 SMG1 phosphorylates UPF1 (enhanced by Exon Junction Complex) R-HSA-1799329 Signal peptidase hydrolyzes signal peptide from ribosome-associated nascent protein R-HSA-1799330 The SRP receptor binds the SRP:nascent peptide:ribosome complex R-HSA-1799326 Signal-containing nascent peptide translocates to endoplasmic reticulum R-HSA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit R-HSA-156827 L13a-mediated translation R-HSA-72689 Formation of a pool of free 40S subunits R-HSA-6791226 Major pathway of rRNA processing in the nucleolus and cytosol R-HSA-1799339 SRP-dependent cotranslational protein targeting to membrane R-HSA-9010553 Regulation of expression of SLITs and ROBOs R-HSA-72737 Cap-dependent Translation Initiation R-HSA-72613 Eukaryotic Translation Initiation R-HSA-8868773 rRNA processing in the nucleus and cytosol R-HSA-156902 Peptide chain elongation R-HSA-2408557 Selenocysteine synthesis R-HSA-72764 Eukaryotic Translation Termination R-HSA-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) R-HSA-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) R-HSA-72766 Translation R-HSA-376176 Signaling by ROBO receptors R-HSA-192823 Viral mRNA Translation R-HSA-72312 rRNA processing R-HSA-156842 Eukaryotic Translation Elongation R-HSA-2408522 Selenoamino acid metabolism R-HSA-927802 Nonsense-Mediated Decay (NMD) R-HSA-392499 Metabolism of proteins R-HSA-422475 Axon guidance R-HSA-168273 Influenza Viral RNA Transcription and Replication R-HSA-8953854 Metabolism of RNA R-HSA-71291 Metabolism of nitrogenous molecules R-HSA-1266738 Developmental Biology R-HSA-168255 Influenza Life Cycle R-HSA-1430728 Metabolism R-HSA-168254 Influenza Infection R-HSA-5663205 Infectious disease R-HSA-1643685 Disease
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