Human Gene ZNF208 (uc021urr.1) Description and Page Index
  Description: Homo sapiens zinc finger protein 208 (ZNF208), mRNA.
RefSeq Summary (NM_007153): Zinc finger proteins (ZNFs), such as ZNF208, bind DNA and, through this binding, regulate gene transcription. Most ZNFs contain conserved C2H2 motifs and are classified as Kruppel-type zinc fingers. A conserved protein motif, termed the Kruppel-associated box (KRAB) domain, mediates protein-protein interactions (Eichler et al., 1998 [PubMed 9724325]). See ZNF91 (MIM 603971) for further information on ZNFs.[supplied by OMIM, Aug 2009].
Transcript (Including UTRs)
   Position: hg19 chr19:22,148,897-22,193,745 Size: 44,849 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr19:22,153,993-22,193,596 Size: 39,604 Coding Exon Count: 4 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:22,148,897-22,193,745)mRNA (may differ from genome)Protein (1280 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
OMIMPubMedStanford SOURCETreefam

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.62 RPKM in Thyroid
Total median expression: 25.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -46.70149-0.313 Picture PostScript Text
3' UTR -1287.005096-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Descriptions from all associated GenBank mRNAs
  KT592304 - Homo sapiens isolate NA18956 inversion HsInv0379 fusion mRNA, partial sequence.
AX721110 - Sequence 70 from Patent WO0220754.
AK096236 - Homo sapiens cDNA FLJ38917 fis, clone NT2NE2008997, moderately similar to ZINC FINGER PROTEIN 91.
AK124313 - Homo sapiens cDNA FLJ42322 fis, clone TRACH2024512.
JD325521 - Sequence 306545 from Patent EP1572962.
JD377477 - Sequence 358501 from Patent EP1572962.
JD555432 - Sequence 536456 from Patent EP1572962.
JD330621 - Sequence 311645 from Patent EP1572962.
LF340533 - JP 2014500723-A/148036: Polycomb-Associated Non-Coding RNAs.
JD314899 - Sequence 295923 from Patent EP1572962.
JD314900 - Sequence 295924 from Patent EP1572962.
JD314898 - Sequence 295922 from Patent EP1572962.
LF331947 - JP 2014500723-A/139450: Polycomb-Associated Non-Coding RNAs.
JD303598 - Sequence 284622 from Patent EP1572962.
LF340532 - JP 2014500723-A/148035: Polycomb-Associated Non-Coding RNAs.
LF340533 - JP 2014500723-A/148036: Polycomb-Associated Non-Coding RNAs.
JD330511 - Sequence 311535 from Patent EP1572962.
JD314879 - Sequence 295903 from Patent EP1572962.
JD051988 - Sequence 33012 from Patent EP1572962.
JD303598 - Sequence 284622 from Patent EP1572962.
JD314879 - Sequence 295903 from Patent EP1572962.
LF340531 - JP 2014500723-A/148034: Polycomb-Associated Non-Coding RNAs.
JD051988 - Sequence 33012 from Patent EP1572962.
JD303598 - Sequence 284622 from Patent EP1572962.
LF340532 - JP 2014500723-A/148035: Polycomb-Associated Non-Coding RNAs.
LF340533 - JP 2014500723-A/148036: Polycomb-Associated Non-Coding RNAs.
JD327922 - Sequence 308946 from Patent EP1572962.
JD327923 - Sequence 308947 from Patent EP1572962.
JD051988 - Sequence 33012 from Patent EP1572962.
JD303598 - Sequence 284622 from Patent EP1572962.
LF340532 - JP 2014500723-A/148035: Polycomb-Associated Non-Coding RNAs.
JD051988 - Sequence 33012 from Patent EP1572962.
JD303598 - Sequence 284622 from Patent EP1572962.
LF340532 - JP 2014500723-A/148035: Polycomb-Associated Non-Coding RNAs.
LF340531 - JP 2014500723-A/148034: Polycomb-Associated Non-Coding RNAs.
JD051988 - Sequence 33012 from Patent EP1572962.
JD303598 - Sequence 284622 from Patent EP1572962.
LF340533 - JP 2014500723-A/148036: Polycomb-Associated Non-Coding RNAs.
JD051988 - Sequence 33012 from Patent EP1572962.
JD303598 - Sequence 284622 from Patent EP1572962.
LF340532 - JP 2014500723-A/148035: Polycomb-Associated Non-Coding RNAs.
JD314886 - Sequence 295910 from Patent EP1572962.
JD314887 - Sequence 295911 from Patent EP1572962.
LF340531 - JP 2014500723-A/148034: Polycomb-Associated Non-Coding RNAs.
JD051988 - Sequence 33012 from Patent EP1572962.
JD303598 - Sequence 284622 from Patent EP1572962.
LF340532 - JP 2014500723-A/148035: Polycomb-Associated Non-Coding RNAs.
LF340533 - JP 2014500723-A/148036: Polycomb-Associated Non-Coding RNAs.
D70833 - Homo sapiens mRNA for Zinc-finger protein, partial cds.
D70834 - Homo sapiens mRNA for Zinc-finger protein, partial cds.
JD330509 - Sequence 311533 from Patent EP1572962.
LF340534 - JP 2014500723-A/148037: Polycomb-Associated Non-Coding RNAs.
JD051988 - Sequence 33012 from Patent EP1572962.
JD303598 - Sequence 284622 from Patent EP1572962.
LF340532 - JP 2014500723-A/148035: Polycomb-Associated Non-Coding RNAs.
LF340532 - JP 2014500723-A/148035: Polycomb-Associated Non-Coding RNAs.
BC038199 - Homo sapiens zinc finger protein 208, mRNA (cDNA clone IMAGE:4177982), with apparent retained intron.
JD424870 - Sequence 405894 from Patent EP1572962.
JD259381 - Sequence 240405 from Patent EP1572962.
JD259380 - Sequence 240404 from Patent EP1572962.
JD381503 - Sequence 362527 from Patent EP1572962.
MA567524 - JP 2018138019-A/139450: Polycomb-Associated Non-Coding RNAs.
MA576110 - JP 2018138019-A/148036: Polycomb-Associated Non-Coding RNAs.
MA576109 - JP 2018138019-A/148035: Polycomb-Associated Non-Coding RNAs.
MA576110 - JP 2018138019-A/148036: Polycomb-Associated Non-Coding RNAs.
MA576108 - JP 2018138019-A/148034: Polycomb-Associated Non-Coding RNAs.
MA576109 - JP 2018138019-A/148035: Polycomb-Associated Non-Coding RNAs.
MA576110 - JP 2018138019-A/148036: Polycomb-Associated Non-Coding RNAs.
MA576109 - JP 2018138019-A/148035: Polycomb-Associated Non-Coding RNAs.
MA576109 - JP 2018138019-A/148035: Polycomb-Associated Non-Coding RNAs.
MA576108 - JP 2018138019-A/148034: Polycomb-Associated Non-Coding RNAs.
MA576110 - JP 2018138019-A/148036: Polycomb-Associated Non-Coding RNAs.
MA576109 - JP 2018138019-A/148035: Polycomb-Associated Non-Coding RNAs.
MA576108 - JP 2018138019-A/148034: Polycomb-Associated Non-Coding RNAs.
MA576109 - JP 2018138019-A/148035: Polycomb-Associated Non-Coding RNAs.
MA576110 - JP 2018138019-A/148036: Polycomb-Associated Non-Coding RNAs.
MA576111 - JP 2018138019-A/148037: Polycomb-Associated Non-Coding RNAs.
MA576109 - JP 2018138019-A/148035: Polycomb-Associated Non-Coding RNAs.
MA576109 - JP 2018138019-A/148035: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_007153, NP_009084
UCSC ID: uc021urr.1
RefSeq Accession: NM_007153
CCDS: CCDS54240.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_007153.3
exon count: 4CDS single in 3' UTR: no RNA size: 9088
ORF size: 3843CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 5134.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 8634# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.