Human Gene LOC100506190 (uc004bxy.2) Description and Page Index
  Description: Homo sapiens uncharacterized LOC100506190 (LOC100506190), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr9:132,250,939-132,275,965 Size: 25,027 Total Exon Count: 5 Strand: +


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:132,250,939-132,275,965)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerH-INVLynxPubMed
Stanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.12 RPKM in Fallopian Tube
Total median expression: 208.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC038559 - Homo sapiens, clone IMAGE:3851018, mRNA.
BC044229 - Homo sapiens, clone IMAGE:5229459, mRNA.
AK024177 - Homo sapiens cDNA FLJ14115 fis, clone MAMMA1001760.
BC019073 - Homo sapiens cDNA clone IMAGE:5092374, partial cds.
AK092686 - Homo sapiens cDNA FLJ35367 fis, clone SKMUS2001323.
BC036842 - Homo sapiens, clone IMAGE:5214912, mRNA.
JD352903 - Sequence 333927 from Patent EP1572962.
BC112296 - Homo sapiens cDNA clone IMAGE:8327764.
BC112298 - Homo sapiens cDNA clone IMAGE:8327766.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_038955
UCSC ID: uc004bxy.2
RefSeq Accession: NR_038955

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_038955.1
exon count: 5CDS single in 3' UTR: no RNA size: 2123
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: -20.00frame shift in genome: no % Coverage: 99.81
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 549# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.