Human Gene DKFZp779K0112 (uc002dju.1) Description and Page Index
  Description: Homo sapiens cDNA FLJ54878 complete cds, highly similar to Serine/threonine-protein kinase SMG1 (EC 2.7.11.1).
Transcript (Including UTRs)
   Position: hg19 chr16:21,891,094-21,900,501 Size: 9,408 Total Exon Count: 8 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:21,891,094-21,900,501)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
H-INVPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.68 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 32.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  D86974 - Homo sapiens mRNA for KIAA0220 gene, partial cds.
AK300040 - Homo sapiens cDNA FLJ54878 complete cds, highly similar to Serine/threonine-protein kinase SMG1 (EC 2.7.11.1).
JD503424 - Sequence 484448 from Patent EP1572962.
BX647335 - Homo sapiens mRNA; cDNA DKFZp779K0112 (from clone DKFZp779K0112).
JD565424 - Sequence 546448 from Patent EP1572962.
JD051927 - Sequence 32951 from Patent EP1572962.
JD420835 - Sequence 401859 from Patent EP1572962.
JD369375 - Sequence 350399 from Patent EP1572962.
JD382738 - Sequence 363762 from Patent EP1572962.
JD382751 - Sequence 363775 from Patent EP1572962.
JD281835 - Sequence 262859 from Patent EP1572962.
JD357391 - Sequence 338415 from Patent EP1572962.
JD525198 - Sequence 506222 from Patent EP1572962.
JD342878 - Sequence 323902 from Patent EP1572962.
JD107051 - Sequence 88075 from Patent EP1572962.
JD184265 - Sequence 165289 from Patent EP1572962.
JD207979 - Sequence 189003 from Patent EP1572962.
JD486566 - Sequence 467590 from Patent EP1572962.
JD562031 - Sequence 543055 from Patent EP1572962.
JD175133 - Sequence 156157 from Patent EP1572962.
JD156042 - Sequence 137066 from Patent EP1572962.
JD113014 - Sequence 94038 from Patent EP1572962.
JD170908 - Sequence 151932 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BX647335
UCSC ID: uc002dju.1
Representative RNA: BX647335

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BX647335.1
exon count: 8CDS single in 3' UTR: no RNA size: 2563
ORF size: 0CDS single in intron: no Alignment % ID: 99.76
txCdsPredict score: 200.00frame shift in genome: no % Coverage: 99.22
has start codon: no stop codon in genome: no # of Alignments: 3
has end codon: no retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 895# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.