Human Gene SLC25A5-AS1 (uc022cdj.1) Description and Page Index
  Description: Homo sapiens SLC25A5 antisense RNA 1 (SLC25A5-AS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chrX:118,599,996-118,603,083 Size: 3,088 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chrX:118,602,148-118,602,564 Size: 417 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:118,599,996-118,603,083)mRNA (may differ from genome)Protein (138 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsH-INVHGNC
LynxMGIPubMedStanford SOURCEUniProtKB

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.02 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 225.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -207.10519-0.399 Picture PostScript Text
3' UTR -622.032152-0.289 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8NAU4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK094280 - Homo sapiens cDNA FLJ36961 fis, clone BRACE2005907.
AK092094 - Homo sapiens cDNA FLJ34775 fis, clone NT2NE2003315.
AX747351 - Sequence 876 from Patent EP1308459.
BC050320 - Homo sapiens cDNA clone IMAGE:5261048.
BC028211 - Homo sapiens, clone IMAGE:5215220, mRNA.
LF211452 - JP 2014500723-A/18955: Polycomb-Associated Non-Coding RNAs.
LF205263 - JP 2014500723-A/12766: Polycomb-Associated Non-Coding RNAs.
LF206895 - JP 2014500723-A/14398: Polycomb-Associated Non-Coding RNAs.
LF211223 - JP 2014500723-A/18726: Polycomb-Associated Non-Coding RNAs.
LF359058 - JP 2014500723-A/166561: Polycomb-Associated Non-Coding RNAs.
LF379809 - JP 2014500723-A/187312: Polycomb-Associated Non-Coding RNAs.
LF359059 - JP 2014500723-A/166562: Polycomb-Associated Non-Coding RNAs.
MA447029 - JP 2018138019-A/18955: Polycomb-Associated Non-Coding RNAs.
MA440840 - JP 2018138019-A/12766: Polycomb-Associated Non-Coding RNAs.
MA442472 - JP 2018138019-A/14398: Polycomb-Associated Non-Coding RNAs.
MA446800 - JP 2018138019-A/18726: Polycomb-Associated Non-Coding RNAs.
MA594635 - JP 2018138019-A/166561: Polycomb-Associated Non-Coding RNAs.
MA615386 - JP 2018138019-A/187312: Polycomb-Associated Non-Coding RNAs.
MA594636 - JP 2018138019-A/166562: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_028443, Q8NAU4, Q8NAU4_HUMAN
UCSC ID: uc022cdj.1
RefSeq Accession: NR_028443
Protein: Q8NAU4

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_028443.1
exon count: 1CDS single in 3' UTR: no RNA size: 3115
ORF size: 417CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 790.00frame shift in genome: no % Coverage: 99.13
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.