Human Gene TRNT1 (uc003bpo.1) Description and Page Index
  Description: Homo sapiens cDNA FLJ42143 fis, clone TESTI2046100.
Transcript (Including UTRs)
   Position: hg19 chr3:3,171,714-3,172,360 Size: 647 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksGenetic AssociationsMalaCardsCTDMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesGeneReviewsModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:3,171,714-3,172,360)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaCGAP
ExonPrimerHGNCLynxPubMedStanford SOURCEWikipedia

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): TRNT1
CDC HuGE Published Literature: TRNT1

-  MalaCards Disease Associations
  MalaCards Gene Search: TRNT1
Diseases sorted by gene-association score: sideroblastic anemia with b-cell immunodeficiency, periodic fevers, and developmental delay* (1694), retinitis pigmentosa and erythrocytic microcytosis* (920), sideroblastic anemia (33), cataract 7 (13), lens disease (4), retinitis pigmentosa (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC005184 - Homo sapiens tRNA nucleotidyl transferase, CCA-adding, 1, mRNA (cDNA clone IMAGE:3686608), complete cds.
AK124137 - Homo sapiens cDNA FLJ42143 fis, clone TESTI2046100.

-  Other Names for This Gene
  Alternate Gene Symbols: AK124137
UCSC ID: uc003bpo.1
Representative RNA: AK124137

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene TRNT1:
rp-overview (Nonsyndromic Retinitis Pigmentosa Overview)

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AK124137.1
exon count: 1CDS single in 3' UTR: no RNA size: 1923
ORF size: 0CDS single in intron: no Alignment % ID: 99.84
txCdsPredict score: 225.50frame shift in genome: no % Coverage: 32.81
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.