Human Gene LOC115110 (uc001ajo.2) Description and Page Index
  Description: Homo sapiens uncharacterized LOC115110 (LOC115110), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:2,481,359-2,484,284 Size: 2,926 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:2,481,359-2,484,284)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerH-INVLynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.65 RPKM in Small Intestine - Terminal Ileum
Total median expression: 164.95 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK021767 - Homo sapiens cDNA FLJ11705 fis, clone HEMBA1005083.
AK128532 - Homo sapiens cDNA FLJ46690 fis, clone TRACH3012460.
JD558399 - Sequence 539423 from Patent EP1572962.
JD564511 - Sequence 545535 from Patent EP1572962.
JD462368 - Sequence 443392 from Patent EP1572962.
JD211695 - Sequence 192719 from Patent EP1572962.
JD370316 - Sequence 351340 from Patent EP1572962.
BC101995 - Homo sapiens cDNA clone IMAGE:40023121.
BC101996 - Homo sapiens cDNA clone IMAGE:40023120.
BC101997 - Homo sapiens cDNA clone IMAGE:40023119.
BC103697 - Homo sapiens cDNA clone IMAGE:40023118.
BC114358 - Homo sapiens cDNA clone IMAGE:40023123.
BC114357 - Homo sapiens cDNA clone IMAGE:40023122.
AL359943 - Homo sapiens mRNA; cDNA DKFZp762D186 (from clone DKFZp762D186).
CR749717 - Homo sapiens mRNA; cDNA DKFZp762D186 (from clone DKFZp762D186).
JD149937 - Sequence 130961 from Patent EP1572962.
JD036793 - Sequence 17817 from Patent EP1572962.
JD102285 - Sequence 83309 from Patent EP1572962.
JD548295 - Sequence 529319 from Patent EP1572962.
JD254105 - Sequence 235129 from Patent EP1572962.
JD407840 - Sequence 388864 from Patent EP1572962.
JD055126 - Sequence 36150 from Patent EP1572962.
JD456431 - Sequence 437455 from Patent EP1572962.
JD334810 - Sequence 315834 from Patent EP1572962.
JD183269 - Sequence 164293 from Patent EP1572962.
JD155455 - Sequence 136479 from Patent EP1572962.
JD434356 - Sequence 415380 from Patent EP1572962.
JD381537 - Sequence 362561 from Patent EP1572962.
JD318860 - Sequence 299884 from Patent EP1572962.
JD469367 - Sequence 450391 from Patent EP1572962.
JD442007 - Sequence 423031 from Patent EP1572962.
JD329682 - Sequence 310706 from Patent EP1572962.
JD240593 - Sequence 221617 from Patent EP1572962.
JD486971 - Sequence 467995 from Patent EP1572962.
JD404452 - Sequence 385476 from Patent EP1572962.
JD334295 - Sequence 315319 from Patent EP1572962.
JD445301 - Sequence 426325 from Patent EP1572962.
JD173065 - Sequence 154089 from Patent EP1572962.
JD202960 - Sequence 183984 from Patent EP1572962.
JD326101 - Sequence 307125 from Patent EP1572962.
JD218374 - Sequence 199398 from Patent EP1572962.
JD334380 - Sequence 315404 from Patent EP1572962.
JD203892 - Sequence 184916 from Patent EP1572962.
JD394942 - Sequence 375966 from Patent EP1572962.
JD382081 - Sequence 363105 from Patent EP1572962.
JD445416 - Sequence 426440 from Patent EP1572962.
JD066021 - Sequence 47045 from Patent EP1572962.
JD368930 - Sequence 349954 from Patent EP1572962.
JD178061 - Sequence 159085 from Patent EP1572962.
JD440591 - Sequence 421615 from Patent EP1572962.
JD408629 - Sequence 389653 from Patent EP1572962.
JD159598 - Sequence 140622 from Patent EP1572962.
JD078617 - Sequence 59641 from Patent EP1572962.
JD453551 - Sequence 434575 from Patent EP1572962.
JD475575 - Sequence 456599 from Patent EP1572962.
JD483507 - Sequence 464531 from Patent EP1572962.
JD336305 - Sequence 317329 from Patent EP1572962.
JD192125 - Sequence 173149 from Patent EP1572962.
JD109737 - Sequence 90761 from Patent EP1572962.
JD459311 - Sequence 440335 from Patent EP1572962.
JD458610 - Sequence 439634 from Patent EP1572962.
JD383673 - Sequence 364697 from Patent EP1572962.
JD069272 - Sequence 50296 from Patent EP1572962.
JD139744 - Sequence 120768 from Patent EP1572962.
JD291990 - Sequence 273014 from Patent EP1572962.
JD446491 - Sequence 427515 from Patent EP1572962.
JD337061 - Sequence 318085 from Patent EP1572962.
JD484917 - Sequence 465941 from Patent EP1572962.
JD395099 - Sequence 376123 from Patent EP1572962.
JD408869 - Sequence 389893 from Patent EP1572962.
JD230881 - Sequence 211905 from Patent EP1572962.
JD088957 - Sequence 69981 from Patent EP1572962.
JD220409 - Sequence 201433 from Patent EP1572962.
JD138671 - Sequence 119695 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK021767
UCSC ID: uc001ajo.2
RefSeq Accession: NR_026927

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AK021767.1
exon count: 3CDS single in 3' UTR: no RNA size: 1629
ORF size: 0CDS single in intron: no Alignment % ID: 99.69
txCdsPredict score: 70.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.