Human Gene AK123300 (uc003sqr.1) Description and Page Index
  Description: Homo sapiens cDNA FLJ41306 fis, clone BRAMY2042549.
Transcript (Including UTRs)
   Position: hg19 chr7:6,703,605-6,714,110 Size: 10,506 Total Exon Count: 3 Strand: +


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:6,703,605-6,714,110)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaCGAPEnsembl
ExonPrimerH-INVPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.27 RPKM in Testis
Total median expression: 14.53 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK123300 - Homo sapiens cDNA FLJ41306 fis, clone BRAMY2042549.
JD202819 - Sequence 183843 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc003sqr.1
Representative RNA: AK123300

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AK123300.1
exon count: 3CDS single in 3' UTR: no RNA size: 2723
ORF size: 0CDS single in intron: no Alignment % ID: 99.52
txCdsPredict score: 540.00frame shift in genome: no % Coverage: 51.78
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.