Human Gene LOC550112 (uc003hdk.3) Description and Page Index
  Description: Homo sapiens uncharacterized LOC550112 (LOC550112), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr4:68,566,996-68,588,222 Size: 21,227 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr4:68,567,014-68,586,256 Size: 19,243 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:68,566,996-68,588,222)mRNA (may differ from genome)Protein (101 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsH-INVLynx
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.96 RPKM in Brain - Hypothalamus
Total median expression: 19.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.0018-0.222 Picture PostScript Text
3' UTR -663.831966-0.338 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AJ617629 - Homo sapiens chromosome 4 cDNA.
BC043376 - Homo sapiens hypothetical LOC550112, mRNA (cDNA clone IMAGE:5194849).
AK129519 - Homo sapiens cDNA FLJ26008 fis, clone DMC08925.
AK093682 - Homo sapiens cDNA FLJ36363 fis, clone THYMU2007694.
DQ600856 - Homo sapiens piRNA piR-38922, complete sequence.
DQ590622 - Homo sapiens piRNA piR-57734, complete sequence.
DQ597502 - Homo sapiens piRNA piR-35568, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_015439
UCSC ID: uc003hdk.3
RefSeq Accession: NR_015439

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_015439.1
exon count: 2CDS single in 3' UTR: no RNA size: 2301
ORF size: 306CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 694.00frame shift in genome: no % Coverage: 99.52
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 1453# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.