Human Gene LINC00882 (uc003dwf.4) Description and Page Index
  Description: Homo sapiens long intergenic non-protein coding RNA 882 (LINC00882), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr3:106,555,658-106,959,485 Size: 403,828 Total Exon Count: 8 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:106,555,658-106,959,485)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerH-INVPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.65 RPKM in Testis
Total median expression: 27.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC036229 - Homo sapiens cDNA clone IMAGE:5284861.
JD294184 - Sequence 275208 from Patent EP1572962.
JD257057 - Sequence 238081 from Patent EP1572962.
JD179175 - Sequence 160199 from Patent EP1572962.
JD199523 - Sequence 180547 from Patent EP1572962.
JD325438 - Sequence 306462 from Patent EP1572962.
JD145149 - Sequence 126173 from Patent EP1572962.
JD283288 - Sequence 264312 from Patent EP1572962.
JD233286 - Sequence 214310 from Patent EP1572962.
JD545161 - Sequence 526185 from Patent EP1572962.
JD098762 - Sequence 79786 from Patent EP1572962.
JD375590 - Sequence 356614 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC036229
UCSC ID: uc003dwf.4
RefSeq Accession: NR_028303

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC036229.1
exon count: 8CDS single in 3' UTR: no RNA size: 2732
ORF size: 0CDS single in intron: no Alignment % ID: 99.78
txCdsPredict score: 112.50frame shift in genome: no % Coverage: 99.49
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.