Human Gene LOC79015 (uc002xml.1) Description and Page Index
  Description: Homo sapiens uncharacterized LOC79015 (LOC79015), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr20:43,289,219-43,367,608 Size: 78,390 Total Exon Count: 4 Strand: -

Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr20:43,289,219-43,367,608)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerH-INVLynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.07 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 38.02 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  BC000849 - Homo sapiens hypothetical protein MGC5566, mRNA (cDNA clone IMAGE:3458308).
KJ900854 - Synthetic construct Homo sapiens clone ccsbBroadEn_10248 LOC79015 gene, encodes complete protein.
AK090842 - Homo sapiens cDNA FLJ33523 fis, clone BRAMY2006411.
JD070264 - Sequence 51288 from Patent EP1572962.
JD514124 - Sequence 495148 from Patent EP1572962.
JD416322 - Sequence 397346 from Patent EP1572962.
JD514123 - Sequence 495147 from Patent EP1572962.
DQ574379 - Homo sapiens piRNA piR-42491, complete sequence.
JD074672 - Sequence 55696 from Patent EP1572962.
JD260329 - Sequence 241353 from Patent EP1572962.
JD340438 - Sequence 321462 from Patent EP1572962.
JD263409 - Sequence 244433 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK090842
UCSC ID: uc002xml.1
RefSeq Accession: NR_034104

-  Gene Model Information
category: noncoding nonsense-mediated-decay: no RNA accession: AK090842.1
exon count: 4CDS single in 3' UTR: no RNA size: 3334
ORF size: 0CDS single in intron: no Alignment % ID: 99.10
txCdsPredict score: 193.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 2776# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.