Human Gene DNAJC27-AS1 (uc002rfv.4) Description and Page Index
  Description: Homo sapiens DNAJC27 antisense RNA 1 (DNAJC27-AS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr2:25,194,981-25,262,563 Size: 67,583 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr2:25,224,356-25,258,307 Size: 33,952 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr2:25,194,981-25,262,563)mRNA (may differ from genome)Protein (74 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsHGNCLynx
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.24 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 19.90 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -75.30193-0.390 Picture PostScript Text
3' UTR -1581.194256-0.372 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  AK130860 - Homo sapiens cDNA FLJ27350 fis, clone TST04882.
CR933670 - Homo sapiens mRNA; cDNA DKFZp781N0456 (from clone DKFZp781N0456).
AK127070 - Homo sapiens cDNA FLJ45127 fis, clone BRAWH3036951.
JD213040 - Sequence 194064 from Patent EP1572962.
JD095282 - Sequence 76306 from Patent EP1572962.
JD267609 - Sequence 248633 from Patent EP1572962.
JD151016 - Sequence 132040 from Patent EP1572962.
JD536627 - Sequence 517651 from Patent EP1572962.
JD536628 - Sequence 517652 from Patent EP1572962.
JD547896 - Sequence 528920 from Patent EP1572962.
JD070624 - Sequence 51648 from Patent EP1572962.
JD151210 - Sequence 132234 from Patent EP1572962.
DQ579310 - Homo sapiens piRNA piR-47422, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_034113, uc002rfv.3
UCSC ID: uc002rfv.4
RefSeq Accession: NR_034113

-  Gene Model Information
category: coding nonsense-mediated-decay: no RNA accession: NR_034113.1
exon count: 3CDS single in 3' UTR: no RNA size: 4695
ORF size: 225CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 634.00frame shift in genome: no % Coverage: 99.55
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.