Human Gene CASC2 (uc001ldk.2) Description and Page Index
  Description: Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 3, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr10:119,806,332-119,815,736 Size: 9,405 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksGenetic AssociationsMalaCardsRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:119,806,332-119,815,736)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerH-INVHGNCLynxPubMed
Stanford SOURCE

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): CASC2
CDC HuGE Published Literature: CASC2
Positive Disease Associations: Forced Expiratory Volume
Related Studies:
  1. Forced Expiratory Volume
    , , . [PubMed 0]
  2. Forced Expiratory Volume
    , , . [PubMed 0]

-  MalaCards Disease Associations
  MalaCards Gene Search: CASC2
Diseases sorted by gene-association score: endometrial cancer (3)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.15 RPKM in Testis
Total median expression: 20.65 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC036393 - Homo sapiens cDNA clone IMAGE:5259174.
AY226450 - Homo sapiens endometrial cancer susceptibility protein (CASC2) mRNA, complete cds.
AJ535621 - Homo sapiens mRNA for hypothetical protein (C10ORF5B gene).
BC112306 - Homo sapiens cDNA clone IMAGE:8327774.
BC112308 - Homo sapiens cDNA clone IMAGE:8327776.
JD218249 - Sequence 199273 from Patent EP1572962.
JD326575 - Sequence 307599 from Patent EP1572962.
AJ535622 - Homo sapiens mRNA for hypothetical protein (C10ORF5C gene).
AK055184 - Homo sapiens cDNA FLJ30622 fis, clone CTONG2001724.
BC112326 - Homo sapiens cancer susceptibility candidate 2, mRNA (cDNA clone IMAGE:5171729).
AY226451 - Homo sapiens endometrial cancer susceptibility protein (CASC2) mRNA, complete sequence; alternatively spliced.
AJ535620 - Homo sapiens mRNA for hypothetical protein (C10ORF5 gene).
AJ344228 - Homo sapiens mRNA for IGM1 protein.
KJ905056 - Synthetic construct Homo sapiens clone ccsbBroadEn_14450 CASC2 gene, encodes complete protein.
JD292075 - Sequence 273099 from Patent EP1572962.
JD186403 - Sequence 167427 from Patent EP1572962.
JD174952 - Sequence 155976 from Patent EP1572962.
JD080414 - Sequence 61438 from Patent EP1572962.
JD037927 - Sequence 18951 from Patent EP1572962.
JD521041 - Sequence 502065 from Patent EP1572962.
JD096252 - Sequence 77276 from Patent EP1572962.
JD429129 - Sequence 410153 from Patent EP1572962.
JD331441 - Sequence 312465 from Patent EP1572962.
JD427941 - Sequence 408965 from Patent EP1572962.
JD509455 - Sequence 490479 from Patent EP1572962.
JD233807 - Sequence 214831 from Patent EP1572962.
JD341129 - Sequence 322153 from Patent EP1572962.
JD503543 - Sequence 484567 from Patent EP1572962.
JD410899 - Sequence 391923 from Patent EP1572962.
JD284252 - Sequence 265276 from Patent EP1572962.
JD146588 - Sequence 127612 from Patent EP1572962.
JD146074 - Sequence 127098 from Patent EP1572962.
JD049921 - Sequence 30945 from Patent EP1572962.
JD171329 - Sequence 152353 from Patent EP1572962.
JD507461 - Sequence 488485 from Patent EP1572962.
JD345491 - Sequence 326515 from Patent EP1572962.
JD390785 - Sequence 371809 from Patent EP1572962.
JD304082 - Sequence 285106 from Patent EP1572962.
JD059310 - Sequence 40334 from Patent EP1572962.
JD272269 - Sequence 253293 from Patent EP1572962.
JD455858 - Sequence 436882 from Patent EP1572962.
JD284545 - Sequence 265569 from Patent EP1572962.
JD147688 - Sequence 128712 from Patent EP1572962.
JD087881 - Sequence 68905 from Patent EP1572962.
JD503455 - Sequence 484479 from Patent EP1572962.
JD065004 - Sequence 46028 from Patent EP1572962.
JD130296 - Sequence 111320 from Patent EP1572962.
JD513684 - Sequence 494708 from Patent EP1572962.
JD365517 - Sequence 346541 from Patent EP1572962.
JD549762 - Sequence 530786 from Patent EP1572962.
JD456255 - Sequence 437279 from Patent EP1572962.
JD113171 - Sequence 94195 from Patent EP1572962.
JD164717 - Sequence 145741 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK055184
UCSC ID: uc001ldk.2
RefSeq Accession: NR_026941

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AK055184.1
exon count: 4CDS single in 3' UTR: no RNA size: 3232
ORF size: 0CDS single in intron: no Alignment % ID: 99.81
txCdsPredict score: 605.50frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.