Human Gene RASAL2-AS1 (uc001gln.1) Description and Page Index
  Description: Homo sapiens RASAL2 antisense RNA 1 (RASAL2-AS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:178,060,643-178,062,735 Size: 2,093 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr1:178,062,133-178,062,453 Size: 321 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:178,060,643-178,062,735)mRNA (may differ from genome)Protein (106 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsH-INVHGNC
LynxMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.98 RPKM in Pituitary
Total median expression: 21.17 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -58.70161-0.365 Picture PostScript Text
3' UTR -392.091490-0.263 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC027927 - Homo sapiens cDNA clone IMAGE:5200165, partial cds.
AK124464 - Homo sapiens cDNA FLJ42473 fis, clone BRACE2030884.
JD349030 - Sequence 330054 from Patent EP1572962.
JD112532 - Sequence 93556 from Patent EP1572962.
JD268042 - Sequence 249066 from Patent EP1572962.
JD237090 - Sequence 218114 from Patent EP1572962.
JD241165 - Sequence 222189 from Patent EP1572962.
JD280920 - Sequence 261944 from Patent EP1572962.
JD112814 - Sequence 93838 from Patent EP1572962.
JD040512 - Sequence 21536 from Patent EP1572962.
JD168891 - Sequence 149915 from Patent EP1572962.
JD158291 - Sequence 139315 from Patent EP1572962.
JD277403 - Sequence 258427 from Patent EP1572962.
JD239284 - Sequence 220308 from Patent EP1572962.
JD172401 - Sequence 153425 from Patent EP1572962.
JD382139 - Sequence 363163 from Patent EP1572962.
JD110842 - Sequence 91866 from Patent EP1572962.
JD058595 - Sequence 39619 from Patent EP1572962.
JD463406 - Sequence 444430 from Patent EP1572962.
JD231171 - Sequence 212195 from Patent EP1572962.
JD064693 - Sequence 45717 from Patent EP1572962.
JD492773 - Sequence 473797 from Patent EP1572962.
JD444910 - Sequence 425934 from Patent EP1572962.
JD331234 - Sequence 312258 from Patent EP1572962.
JD148705 - Sequence 129729 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK124464
UCSC ID: uc001gln.1
RefSeq Accession: NR_027982

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK124464.1
exon count: 2CDS single in 3' UTR: no RNA size: 1972
ORF size: 321CDS single in intron: no Alignment % ID: 99.95
txCdsPredict score: 661.00frame shift in genome: no % Coverage: 99.90
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.