Human Gene GOLGA6L4 (uc021stn.2) Description and Page Index
  Description: Homo sapiens golgin A6 family-like 4 (GOLGA6L4), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr15:84,904,525-84,914,120 Size: 9,596 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr15:84,904,587-84,911,344 Size: 6,758 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:84,904,525-84,914,120)mRNA (may differ from genome)Protein (438 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsH-INVHGNC
LynxMGIPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: J3KQ80_HUMAN
DESCRIPTION: SubName: Full=Uncharacterized protein;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.08 RPKM in Ovary
Total median expression: 47.12 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.2062-0.310 Picture PostScript Text
3' UTR -681.632776-0.246 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026737 - GOLGA6L

Pfam Domains:
PF15070 - Putative golgin subfamily A member 2-like protein 5

ModBase Predicted Comparative 3D Structure on J3KQ80
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0005794 Golgi apparatus


-  Descriptions from all associated GenBank mRNAs
  KJ904296 - Synthetic construct Homo sapiens clone ccsbBroadEn_13690 GOLGA6L9 gene, encodes complete protein.
JD348515 - Sequence 329539 from Patent EP1572962.
JD537222 - Sequence 518246 from Patent EP1572962.
JD560418 - Sequence 541442 from Patent EP1572962.
JD373086 - Sequence 354110 from Patent EP1572962.
JD437603 - Sequence 418627 from Patent EP1572962.
JD279459 - Sequence 260483 from Patent EP1572962.
JD488863 - Sequence 469887 from Patent EP1572962.
JD239486 - Sequence 220510 from Patent EP1572962.
AK098200 - Homo sapiens cDNA FLJ40881 fis, clone UTERU2000074, moderately similar to Human fusion protein (RARA/myl) mRNA.
JD325583 - Sequence 306607 from Patent EP1572962.
JD239403 - Sequence 220427 from Patent EP1572962.
JD052230 - Sequence 33254 from Patent EP1572962.
JD220991 - Sequence 202015 from Patent EP1572962.
JD391022 - Sequence 372046 from Patent EP1572962.
JD391021 - Sequence 372045 from Patent EP1572962.
JD159242 - Sequence 140266 from Patent EP1572962.
JD045819 - Sequence 26843 from Patent EP1572962.
KJ905678 - Synthetic construct Homo sapiens clone ccsbBroadEn_15348 hypothetical protein, encodes complete protein.
JD084535 - Sequence 65559 from Patent EP1572962.
JD339640 - Sequence 320664 from Patent EP1572962.
JD437146 - Sequence 418170 from Patent EP1572962.
JD205087 - Sequence 186111 from Patent EP1572962.
JD424138 - Sequence 405162 from Patent EP1572962.
JD040141 - Sequence 21165 from Patent EP1572962.
JD065864 - Sequence 46888 from Patent EP1572962.
JD475022 - Sequence 456046 from Patent EP1572962.
JD205531 - Sequence 186555 from Patent EP1572962.
JD372938 - Sequence 353962 from Patent EP1572962.
JD339638 - Sequence 320662 from Patent EP1572962.
JD424144 - Sequence 405168 from Patent EP1572962.
JD205087 - Sequence 186111 from Patent EP1572962.
BC101293 - Homo sapiens golgi autoantigen, golgin subfamily a, 9 pseudogene, mRNA (cDNA clone IMAGE:40024530).
BC101294 - Homo sapiens hypothetical protein LOC161527, mRNA (cDNA clone IMAGE:40024534), partial cds.
JD088120 - Sequence 69144 from Patent EP1572962.
JD325708 - Sequence 306732 from Patent EP1572962.
JD462878 - Sequence 443902 from Patent EP1572962.
BX647899 - Homo sapiens mRNA; cDNA DKFZp686E04118 (from clone DKFZp686E04118).
JD040141 - Sequence 21165 from Patent EP1572962.
JD065864 - Sequence 46888 from Patent EP1572962.
JD215998 - Sequence 197022 from Patent EP1572962.
AK090778 - Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.
JD090816 - Sequence 71840 from Patent EP1572962.
JD320771 - Sequence 301795 from Patent EP1572962.
JD553421 - Sequence 534445 from Patent EP1572962.
JD432742 - Sequence 413766 from Patent EP1572962.
JD284257 - Sequence 265281 from Patent EP1572962.
JD503080 - Sequence 484104 from Patent EP1572962.
JD503081 - Sequence 484105 from Patent EP1572962.
JD045452 - Sequence 26476 from Patent EP1572962.
JD528043 - Sequence 509067 from Patent EP1572962.
JD349228 - Sequence 330252 from Patent EP1572962.
JD300138 - Sequence 281162 from Patent EP1572962.
JD046799 - Sequence 27823 from Patent EP1572962.
JD543937 - Sequence 524961 from Patent EP1572962.
JD045891 - Sequence 26915 from Patent EP1572962.
DQ598816 - Homo sapiens piRNA piR-36882, complete sequence.
JD245936 - Sequence 226960 from Patent EP1572962.
DQ593686 - Homo sapiens piRNA piR-33798, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: J3KQ80, J3KQ80_HUMAN, NM_001267536, NP_001254465, uc021stn.1
UCSC ID: uc021stn.2
RefSeq Accession: NM_001267536
Protein: J3KQ80

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001267536.1
exon count: 12CDS single in 3' UTR: no RNA size: 4155
ORF size: 1317CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1463.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 2
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.