Human Gene SNORA8 (uc009ywe.3) Description and Page Index
  Description: Homo sapiens small nucleolar RNA, H/ACA box 8 (SNORA8), small nucleolar RNA.
Transcript (Including UTRs)
   Position: hg19 chr11:93,463,681-93,465,665 Size: 1,985 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:93,463,681-93,465,665)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerHGNCLynx
PubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.02 RPKM in Brain - Anterior cingulate cortex (BA24)
Total median expression: 564.45 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK057183 - Homo sapiens cDNA FLJ32621 fis, clone STOMA2000395.
AK027016 - Homo sapiens cDNA: FLJ23363 fis, clone HEP15507.
BC001972 - Homo sapiens TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa, mRNA (cDNA clone MGC:5306 IMAGE:3460203), complete cds.
AK128061 - Homo sapiens cDNA FLJ46181 fis, clone TESTI4004210.
AJ609461 - Homo sapiens ACA25 snoRNA gene.
JD468760 - Sequence 449784 from Patent EP1572962.
JD090815 - Sequence 71839 from Patent EP1572962.
JD113302 - Sequence 94326 from Patent EP1572962.
JD284477 - Sequence 265501 from Patent EP1572962.
JD181310 - Sequence 162334 from Patent EP1572962.
JD295249 - Sequence 276273 from Patent EP1572962.
JD092867 - Sequence 73891 from Patent EP1572962.
JD268659 - Sequence 249683 from Patent EP1572962.
AJ609442 - Homo sapiens ACA32 snoRNA gene.
JD536280 - Sequence 517304 from Patent EP1572962.
JD080558 - Sequence 61582 from Patent EP1572962.
JD507734 - Sequence 488758 from Patent EP1572962.
AJ609489 - Homo sapiens mgh28S-2412 snoRNA gene.
DQ571335 - Homo sapiens piRNA piR-31447, complete sequence.
DQ570000 - Homo sapiens piRNA piR-30112, complete sequence.
AJ609425 - Homo sapiens ACA1 snoRNA gene.
AJ609454 - Homo sapiens ACA8 snoRNA gene.
LP896609 - Sequence 1473 from Patent EP3253886.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_002920
UCSC ID: uc009ywe.3
RefSeq Accession: NR_002920

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_002920.1
exon count: 1CDS single in 3' UTR: no RNA size: 139
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 584.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.