Human Gene BC040901 (uc003mle.3) Description and Page Index
  Description: SubName: Full=Uncharacterized protein;
Transcript (Including UTRs)
   Position: hg19 chr5:179,286,013-179,288,282 Size: 2,270 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr5:179,287,310-179,287,780 Size: 471 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:179,286,013-179,288,282)mRNA (may differ from genome)Protein (156 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaCGAPEnsembl
ExonPrimerGeneCardsMGIPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: D6RGH1_HUMAN
DESCRIPTION: SubName: Full=Uncharacterized protein;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.33 RPKM in Testis
Total median expression: 65.47 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -166.81480-0.348 Picture PostScript Text
3' UTR -97.69502-0.195 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on D6RGH1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC040901 - Homo sapiens, clone IMAGE:5743779, mRNA.
JD439228 - Sequence 420252 from Patent EP1572962.
JD417095 - Sequence 398119 from Patent EP1572962.
JD079948 - Sequence 60972 from Patent EP1572962.
JD437535 - Sequence 418559 from Patent EP1572962.
JD536377 - Sequence 517401 from Patent EP1572962.
JD241478 - Sequence 222502 from Patent EP1572962.
JD385800 - Sequence 366824 from Patent EP1572962.
JD306927 - Sequence 287951 from Patent EP1572962.
JD359727 - Sequence 340751 from Patent EP1572962.
JD549346 - Sequence 530370 from Patent EP1572962.
JD252649 - Sequence 233673 from Patent EP1572962.
JD382863 - Sequence 363887 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: D6RGH1, D6RGH1_HUMAN
UCSC ID: uc003mle.3
Representative RNA: BC040901
Protein: D6RGH1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC040901.1
exon count: 2CDS single in 3' UTR: no RNA size: 1480
ORF size: 471CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 838.00frame shift in genome: no % Coverage: 98.18
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.