Human Gene AURKAPS1 (uc001hmj.2) Description and Page Index
  Description: Homo sapiens aurora kinase A pseudogene 1 (AURKAPS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:220,439,521-220,441,057 Size: 1,537 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksGenetic AssociationsRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:220,439,521-220,441,057)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerHGNCLynxPubMed
Stanford SOURCE

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): AURKAPS1
CDC HuGE Published Literature: AURKAPS1
Positive Disease Associations: Body Height
Related Studies:
  1. Body Height
    , , . [PubMed 0]

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.82 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 19.64 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC050630 - Homo sapiens cDNA clone IMAGE:5580410, containing frame-shift errors.
JD238690 - Sequence 219714 from Patent EP1572962.
JD115208 - Sequence 96232 from Patent EP1572962.
JD167712 - Sequence 148736 from Patent EP1572962.
LF350766 - JP 2014500723-A/158269: Polycomb-Associated Non-Coding RNAs.
LF350767 - JP 2014500723-A/158270: Polycomb-Associated Non-Coding RNAs.
MA586343 - JP 2018138019-A/158269: Polycomb-Associated Non-Coding RNAs.
MA586344 - JP 2018138019-A/158270: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_001587
UCSC ID: uc001hmj.2
RefSeq Accession: NR_001587

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_001587.1
exon count: 1CDS single in 3' UTR: no RNA size: 1537
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 380.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.