Human Gene TRIM53AP (uc010rtz.2) Description and Page Index
  Description: Homo sapiens tripartite motif containing 53A, pseudogene (TRIM53AP), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr11:89,726,709-89,735,676 Size: 8,968 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr11:89,728,473-89,732,905 Size: 4,433 Coding Exon Count: 5 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:89,726,709-89,735,676)mRNA (may differ from genome)Protein (285 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsHGNCLynx
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.06 RPKM in Testis
Total median expression: 0.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.50195-0.285 Picture PostScript Text
3' UTR -178.76677-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  JD559264 - Sequence 540288 from Patent EP1572962.
JD128739 - Sequence 109763 from Patent EP1572962.
JD461488 - Sequence 442512 from Patent EP1572962.
JD051582 - Sequence 32606 from Patent EP1572962.
JD274008 - Sequence 255032 from Patent EP1572962.
JF968456 - Homo sapiens clone D1 TRIM80P mRNA, partial cds.
JF968457 - Homo sapiens clone D2 TRIM53 mRNA, partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_028346
UCSC ID: uc010rtz.2
RefSeq Accession: NR_028346

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_028346.1
exon count: 7CDS single in 3' UTR: no RNA size: 1744
ORF size: 858CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1049.00frame shift in genome: no % Coverage: 99.20
has start codon: yes stop codon in genome: no # of Alignments: 2
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.