Human Gene SPATA31A3 (uc010mmj.3) Description and Page Index
  Description: Homo sapiens SPATA31 subfamily A, member 3 (SPATA31A3), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr9:40,700,291-40,706,537 Size: 6,247 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr9:40,700,320-40,706,387 Size: 6,068 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:40,700,291-40,706,537)mRNA (may differ from genome)Protein (1347 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsGeneNetworkH-INV
HGNCHPRDLynxMGIneXtProtPubMed
Stanford SOURCETreefamUniProtKB

-  Comments and Description Text from UniProtKB
  ID: F75A3_HUMAN
DESCRIPTION: RecName: Full=Protein FAM75A3;
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein (Potential).
SIMILARITY: Belongs to the FAM75 family.

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.05 RPKM in Testis
Total median expression: 0.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.3029-0.252 Picture PostScript Text
3' UTR -19.60150-0.131 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF14650 - FAM75 family
PF15371 - Domain of unknown function (DUF4599)

ModBase Predicted Comparative 3D Structure on Q5VYP0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0007283 spermatogenesis
GO:0030154 cell differentiation

Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  JD057240 - Sequence 38264 from Patent EP1572962.
JD229057 - Sequence 210081 from Patent EP1572962.
JD523291 - Sequence 504315 from Patent EP1572962.
JD202028 - Sequence 183052 from Patent EP1572962.
JD391654 - Sequence 372678 from Patent EP1572962.
JD334443 - Sequence 315467 from Patent EP1572962.
JD334442 - Sequence 315466 from Patent EP1572962.
AL080148 - Homo sapiens mRNA; cDNA DKFZp434B204 (from clone DKFZp434B204).
JD555276 - Sequence 536300 from Patent EP1572962.
JD131150 - Sequence 112174 from Patent EP1572962.
JD313036 - Sequence 294060 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: F75A3_HUMAN, FAM75A3, NM_001083124, NP_001076593, Q5VYP0
UCSC ID: uc010mmj.3
RefSeq Accession: NM_001083124
Protein: Q5VYP0 (aka F75A3_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001083124.1
exon count: 4CDS single in 3' UTR: no RNA size: 4223
ORF size: 4044CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 5781.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.