Human Gene SPDYE8P (uc010lcs.3) Description and Page Index
  Description: Homo sapiens speedy/RINGO cell cycle regulator family member E8, pseudogene (SPDYE8P), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr7:74,940,441-74,946,587 Size: 6,147 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr7:74,942,012-74,944,219 Size: 2,208 Coding Exon Count: 3 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:74,940,441-74,946,587)mRNA (may differ from genome)Protein (125 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsGeneNetworkH-INVHGNC
LynxMGIPubMedStanford SOURCETreefam

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.05 RPKM in Testis
Total median expression: 0.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -113.93344-0.331 Picture PostScript Text
3' UTR -401.621515-0.265 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC045636 - Homo sapiens Williams Beuren syndrome chromosome region 19 pseudogene, mRNA (cDNA clone IMAGE:5297653).
BC068610 - Homo sapiens Williams Beuren syndrome chromosome region 19 pseudogene, mRNA (cDNA clone IMAGE:5297606).
KJ904262 - Synthetic construct Homo sapiens clone ccsbBroadEn_13656 SPDYE8P gene, encodes complete protein.
BC110795 - Homo sapiens Williams Beuren syndrome chromosome region 19 pseudogene, mRNA (cDNA clone IMAGE:5166226).
BC047594 - Homo sapiens Williams Beuren syndrome chromosome region 19 pseudogene, mRNA (cDNA clone IMAGE:4826159).
JD153996 - Sequence 135020 from Patent EP1572962.
JD164584 - Sequence 145608 from Patent EP1572962.
JD524591 - Sequence 505615 from Patent EP1572962.
JD079298 - Sequence 60322 from Patent EP1572962.
JD114669 - Sequence 95693 from Patent EP1572962.
JD055895 - Sequence 36919 from Patent EP1572962.
JD151154 - Sequence 132178 from Patent EP1572962.
JD141404 - Sequence 122428 from Patent EP1572962.
JD208080 - Sequence 189104 from Patent EP1572962.
JD355445 - Sequence 336469 from Patent EP1572962.
DQ587082 - Homo sapiens piRNA piR-54194, complete sequence.
JD554288 - Sequence 535312 from Patent EP1572962.
JD554289 - Sequence 535313 from Patent EP1572962.
JD516435 - Sequence 497459 from Patent EP1572962.
JD555793 - Sequence 536817 from Patent EP1572962.
JD485031 - Sequence 466055 from Patent EP1572962.
JD182134 - Sequence 163158 from Patent EP1572962.
JD332935 - Sequence 313959 from Patent EP1572962.
JD332934 - Sequence 313958 from Patent EP1572962.
JD280897 - Sequence 261921 from Patent EP1572962.
JD200717 - Sequence 181741 from Patent EP1572962.
JD090696 - Sequence 71720 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC047594
UCSC ID: uc010lcs.3
RefSeq Accession: NR_003664

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC047594.1
exon count: 5CDS single in 3' UTR: no RNA size: 2039
ORF size: 378CDS single in intron: no Alignment % ID: 99.90
txCdsPredict score: 955.00frame shift in genome: no % Coverage: 99.26
has start codon: yes stop codon in genome: no # of Alignments: 6
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 273# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.