Human Gene SEC14L1P1 (uc010rfk.3) Description and Page Index
  Description: Homo sapiens SEC14-like 1 pseudogene 1 (SEC14L1P1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr11:43,918,853-43,921,424 Size: 2,572 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr11:43,919,006-43,919,473 Size: 468 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:43,918,853-43,921,424)mRNA (may differ from genome)Protein (155 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsHGNCLynx
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.89 RPKM in Testis
Total median expression: 28.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -22.80153-0.149 Picture PostScript Text
3' UTR -713.021951-0.365 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Descriptions from all associated GenBank mRNAs
  LF205787 - JP 2014500723-A/13290: Polycomb-Associated Non-Coding RNAs.
AK315266 - Homo sapiens cDNA, FLJ96275.
BC067257 - Homo sapiens alkB, alkylation repair homolog 3 (E. coli), mRNA (cDNA clone MGC:74669 IMAGE:6176933), complete cds.
KJ904026 - Synthetic construct Homo sapiens clone ccsbBroadEn_13420 ALKBH3 gene, encodes complete protein.
MA441364 - JP 2018138019-A/13290: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_026952, uc010rfk.2
UCSC ID: uc010rfk.3
RefSeq Accession: NR_026952

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_026952.1
exon count: 1CDS single in 3' UTR: no RNA size: 2586
ORF size: 468CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1031.00frame shift in genome: no % Coverage: 99.46
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.