Human Gene LRRC37BP1 (uc010csj.3) Description and Page Index
  Description: Homo sapiens leucine rich repeat containing 37B pseudogene 1 (LRRC37BP1), non-coding RNA.
RefSeq Summary (NR_015341): This locus represents naturally occurring readthrough transcription between SMURF2P1 (GeneID: 107133516) and LRRC37BP1 (GeneID: 147172) pseudogenes on chromosome 17. The individual pseudogene loci are not curated as transcribed regions. The readthrough transcript likely does not encode a functional protein, since translation of the long open reading frames would render the transcript a candidate for nonsense-mediated decay (NMD). [provided by RefSeq, Jan 2016]. ##Evidence-Data-START## Transcript exon combination :: BC042455.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2148093 [ECO:0000348] ##Evidence-Data-END##
Transcript (Including UTRs)
   Position: hg19 chr17:28,935,448-28,992,716 Size: 57,269 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr17:28,975,442-28,990,815 Size: 15,374 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:28,935,448-28,992,716)mRNA (may differ from genome)Protein (89 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsGeneNetworkH-INVHGNC
LynxMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.91 RPKM in Testis
Total median expression: 18.93 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -65.60244-0.269 Picture PostScript Text
3' UTR -626.171901-0.329 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AL359623 - Homo sapiens mRNA; cDNA DKFZp761J182 (from clone DKFZp761J182).
AF086476 - Homo sapiens full length insert cDNA clone ZD88F12.
BC042455 - Homo sapiens leucine rich repeat containing 37, member B2, mRNA (cDNA clone IMAGE:4827262), with apparent retained intron.
AK075282 - Homo sapiens cDNA FLJ90801 fis, clone Y79AA1000207.
BC118647 - Homo sapiens leucine rich repeat containing 37, member B2, mRNA (cDNA clone IMAGE:40031564).
JD518848 - Sequence 499872 from Patent EP1572962.
JD276827 - Sequence 257851 from Patent EP1572962.
JD386089 - Sequence 367113 from Patent EP1572962.
JD080465 - Sequence 61489 from Patent EP1572962.
JD172545 - Sequence 153569 from Patent EP1572962.
JD221611 - Sequence 202635 from Patent EP1572962.
JD242185 - Sequence 223209 from Patent EP1572962.
JD466288 - Sequence 447312 from Patent EP1572962.
JD073136 - Sequence 54160 from Patent EP1572962.
JD069553 - Sequence 50577 from Patent EP1572962.
JD094481 - Sequence 75505 from Patent EP1572962.
JD071910 - Sequence 52934 from Patent EP1572962.
JD064354 - Sequence 45378 from Patent EP1572962.
JD357132 - Sequence 338156 from Patent EP1572962.
JD151950 - Sequence 132974 from Patent EP1572962.
JD140608 - Sequence 121632 from Patent EP1572962.
JD198367 - Sequence 179391 from Patent EP1572962.
JD153079 - Sequence 134103 from Patent EP1572962.
JD160930 - Sequence 141954 from Patent EP1572962.
JD160931 - Sequence 141955 from Patent EP1572962.
JD281490 - Sequence 262514 from Patent EP1572962.
JD492096 - Sequence 473120 from Patent EP1572962.
JD054084 - Sequence 35108 from Patent EP1572962.
JD389004 - Sequence 370028 from Patent EP1572962.
JD389005 - Sequence 370029 from Patent EP1572962.
JD564000 - Sequence 545024 from Patent EP1572962.
JD095334 - Sequence 76358 from Patent EP1572962.
JD364150 - Sequence 345174 from Patent EP1572962.
JD360658 - Sequence 341682 from Patent EP1572962.
JD254775 - Sequence 235799 from Patent EP1572962.
JD264852 - Sequence 245876 from Patent EP1572962.
JD249402 - Sequence 230426 from Patent EP1572962.
JD264533 - Sequence 245557 from Patent EP1572962.
JD318461 - Sequence 299485 from Patent EP1572962.
JD356763 - Sequence 337787 from Patent EP1572962.
JD372028 - Sequence 353052 from Patent EP1572962.
JD376595 - Sequence 357619 from Patent EP1572962.
JD070588 - Sequence 51612 from Patent EP1572962.
JD398820 - Sequence 379844 from Patent EP1572962.
JD150902 - Sequence 131926 from Patent EP1572962.
JD150903 - Sequence 131927 from Patent EP1572962.
JD134356 - Sequence 115380 from Patent EP1572962.
JD073119 - Sequence 54143 from Patent EP1572962.
JD182073 - Sequence 163097 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AL359623, uc010csj.2
UCSC ID: uc010csj.3
RefSeq Accession: NR_015341

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AL359623.1
exon count: 4CDS single in 3' UTR: no RNA size: 2430
ORF size: 270CDS single in intron: no Alignment % ID: 99.70
txCdsPredict score: 666.50frame shift in genome: no % Coverage: 96.83
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.