Human Gene FLJ33360 (uc003jdn.1) Description and Page Index
  Description: Homo sapiens FLJ33360 protein (FLJ33360), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr5:6,310,554-6,337,405 Size: 26,852 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr5:6,312,483-6,337,308 Size: 24,826 Coding Exon Count: 2 

Page IndexSequence and LinksGenetic AssociationsGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:6,310,554-6,337,405)mRNA (may differ from genome)Protein (130 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsH-INVLynx
MGIPubMedStanford SOURCEUniProtKB

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): FLJ33360
CDC HuGE Published Literature: FLJ33360
Positive Disease Associations: Socioeconomic Factors , Triglycerides
Related Studies:
  1. Socioeconomic Factors
    , , . [PubMed 0]
  2. Triglycerides
    , , . [PubMed 0]

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.72 RPKM in Brain - Cerebellum
Total median expression: 21.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.6097-0.346 Picture PostScript Text
3' UTR -609.281929-0.316 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8NBE2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK090679 - Homo sapiens cDNA FLJ33360 fis, clone BRACE2005253.
AX746570 - Sequence 95 from Patent EP1308459.
JD450671 - Sequence 431695 from Patent EP1572962.
JD403243 - Sequence 384267 from Patent EP1572962.
JD513218 - Sequence 494242 from Patent EP1572962.
JD343790 - Sequence 324814 from Patent EP1572962.
JD363629 - Sequence 344653 from Patent EP1572962.
JD061160 - Sequence 42184 from Patent EP1572962.
JD114950 - Sequence 95974 from Patent EP1572962.
JD505208 - Sequence 486232 from Patent EP1572962.
JD538715 - Sequence 519739 from Patent EP1572962.
JD342660 - Sequence 323684 from Patent EP1572962.
JD108208 - Sequence 89232 from Patent EP1572962.
JD066309 - Sequence 47333 from Patent EP1572962.
JD242953 - Sequence 223977 from Patent EP1572962.
JD567060 - Sequence 548084 from Patent EP1572962.
JD567061 - Sequence 548085 from Patent EP1572962.
JD398818 - Sequence 379842 from Patent EP1572962.
JD070586 - Sequence 51610 from Patent EP1572962.
JD522208 - Sequence 503232 from Patent EP1572962.
JD151636 - Sequence 132660 from Patent EP1572962.
JD526097 - Sequence 507121 from Patent EP1572962.
JD352849 - Sequence 333873 from Patent EP1572962.
JD142116 - Sequence 123140 from Patent EP1572962.
JD275452 - Sequence 256476 from Patent EP1572962.
JD275451 - Sequence 256475 from Patent EP1572962.
JD282176 - Sequence 263200 from Patent EP1572962.
JD343240 - Sequence 324264 from Patent EP1572962.
JD418747 - Sequence 399771 from Patent EP1572962.
JD065756 - Sequence 46780 from Patent EP1572962.
JD270304 - Sequence 251328 from Patent EP1572962.
JD459717 - Sequence 440741 from Patent EP1572962.
JD464730 - Sequence 445754 from Patent EP1572962.
JD208011 - Sequence 189035 from Patent EP1572962.
JD551696 - Sequence 532720 from Patent EP1572962.
JD195222 - Sequence 176246 from Patent EP1572962.
JD555409 - Sequence 536433 from Patent EP1572962.
JD048852 - Sequence 29876 from Patent EP1572962.
BC132707 - Homo sapiens FLJ33360 protein, mRNA (cDNA clone MGC:164338 IMAGE:40146729), complete cds.
BC132709 - Homo sapiens FLJ33360 protein, mRNA (cDNA clone MGC:164340 IMAGE:40146731), complete cds.
JD502292 - Sequence 483316 from Patent EP1572962.
JD164592 - Sequence 145616 from Patent EP1572962.
JD478679 - Sequence 459703 from Patent EP1572962.
JD534905 - Sequence 515929 from Patent EP1572962.
HQ258725 - Synthetic construct Homo sapiens clone IMAGE:100072755 Unknown protein gene, encodes complete protein.
JD086152 - Sequence 67176 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_028351, Q8NBE2, Q8NBE2_HUMAN
UCSC ID: uc003jdn.1
RefSeq Accession: NR_028351
Protein: Q8NBE2

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_028351.1
exon count: 2CDS single in 3' UTR: no RNA size: 2419
ORF size: 393CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 980.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.