Human Gene LINC00638 (uc001ypq.4) Description and Page Index
  Description: Homo sapiens long intergenic non-protein coding RNA 638 (LINC00638), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr14:105,287,538-105,290,055 Size: 2,518 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr14:105,287,591-105,287,911 Size: 321 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:105,287,538-105,290,055)mRNA (may differ from genome)Protein (106 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.84 RPKM in Thyroid
Total median expression: 15.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.5653-0.237 Picture PostScript Text
3' UTR -894.292144-0.417 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK095404 - Homo sapiens cDNA FLJ38085 fis, clone CTONG2016505.
AK292179 - Homo sapiens cDNA FLJ77170 complete cds.
BC015579 - Homo sapiens cDNA clone IMAGE:4636445.
BC041036 - Homo sapiens hypothetical LOC196872, mRNA (cDNA clone IMAGE:4662185).
JD110701 - Sequence 91725 from Patent EP1572962.
JD547973 - Sequence 528997 from Patent EP1572962.
JD525584 - Sequence 506608 from Patent EP1572962.
KJ901178 - Synthetic construct Homo sapiens clone ccsbBroadEn_10572 MGC23270 gene, encodes complete protein.
JD149795 - Sequence 130819 from Patent EP1572962.
JD060556 - Sequence 41580 from Patent EP1572962.
JD251246 - Sequence 232270 from Patent EP1572962.
JD336196 - Sequence 317220 from Patent EP1572962.
JD268958 - Sequence 249982 from Patent EP1572962.
JD525479 - Sequence 506503 from Patent EP1572962.
JD171549 - Sequence 152573 from Patent EP1572962.
JD315983 - Sequence 297007 from Patent EP1572962.
JD457051 - Sequence 438075 from Patent EP1572962.
JD443800 - Sequence 424824 from Patent EP1572962.
JD189360 - Sequence 170384 from Patent EP1572962.
JD115639 - Sequence 96663 from Patent EP1572962.
JD459880 - Sequence 440904 from Patent EP1572962.
JD490459 - Sequence 471483 from Patent EP1572962.
JD468089 - Sequence 449113 from Patent EP1572962.
JD338024 - Sequence 319048 from Patent EP1572962.
JD409976 - Sequence 391000 from Patent EP1572962.
JD194750 - Sequence 175774 from Patent EP1572962.
JD537345 - Sequence 518369 from Patent EP1572962.
JD448495 - Sequence 429519 from Patent EP1572962.
JD144041 - Sequence 125065 from Patent EP1572962.
JD230214 - Sequence 211238 from Patent EP1572962.
JD257699 - Sequence 238723 from Patent EP1572962.
JD352076 - Sequence 333100 from Patent EP1572962.
JD269994 - Sequence 251018 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_024396, uc001ypq.3
UCSC ID: uc001ypq.4
RefSeq Accession: NR_024396

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_024396.1
exon count: 1CDS single in 3' UTR: no RNA size: 2518
ORF size: 321CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 636.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.