Human Gene NUTM2D (uc001kes.3) Description and Page Index
  Description: Homo sapiens NUT family member 2D (NUTM2D), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr10:89,117,477-89,126,950 Size: 9,474 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr10:89,118,023-89,126,681 Size: 8,659 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:89,117,477-89,126,950)mRNA (may differ from genome)Protein (806 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerGeneCardsHGNCLynxMGIneXtProt
PubMedStanford SOURCETreefamUniProtKB

-  Comments and Description Text from UniProtKB
  ID: FA22D_HUMAN
DESCRIPTION: RecName: Full=Protein FAM22D;
SIMILARITY: Belongs to the FAM22 family.

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.65 RPKM in Testis
Total median expression: 17.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -175.64546-0.322 Picture PostScript Text
3' UTR -102.50269-0.381 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024310 - NUT/FAM22
IPR024313 - NUT_C
IPR024309 - NUT_N

Pfam Domains:
PF12881 - NUT protein

ModBase Predicted Comparative 3D Structure on Q5VT03
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC092519 - Homo sapiens cDNA clone IMAGE:3092297.
JD255490 - Sequence 236514 from Patent EP1572962.
JD477387 - Sequence 458411 from Patent EP1572962.
JD163890 - Sequence 144914 from Patent EP1572962.
JD199232 - Sequence 180256 from Patent EP1572962.
JD253753 - Sequence 234777 from Patent EP1572962.
JD499829 - Sequence 480853 from Patent EP1572962.
DQ593562 - Homo sapiens piRNA piR-33674, complete sequence.
DQ596023 - Homo sapiens piRNA piR-34089, complete sequence.
BC033231 - Homo sapiens family with sequence similarity 22, member A, mRNA (cDNA clone IMAGE:5258548), partial cds.
JD276285 - Sequence 257309 from Patent EP1572962.
JD317835 - Sequence 298859 from Patent EP1572962.
DQ597133 - Homo sapiens piRNA piR-35199, complete sequence.
JD196670 - Sequence 177694 from Patent EP1572962.
JD188363 - Sequence 169387 from Patent EP1572962.
JD360126 - Sequence 341150 from Patent EP1572962.
JD556661 - Sequence 537685 from Patent EP1572962.
JD253270 - Sequence 234294 from Patent EP1572962.
JD543664 - Sequence 524688 from Patent EP1572962.
JD485283 - Sequence 466307 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NGV9, BC092519, FA22D_HUMAN, FAM22D, Q5VT03
UCSC ID: uc001kes.3
RefSeq Accession: NR_075100
Protein: Q5VT03 (aka FA22D_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC092519.1
exon count: 7CDS single in 3' UTR: no RNA size: 3304
ORF size: 2421CDS single in intron: no Alignment % ID: 99.63
txCdsPredict score: 4361.00frame shift in genome: no % Coverage: 97.82
has start codon: yes stop codon in genome: no # of Alignments: 2
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.