Human Gene FES (uc002bpv.3)
  Description: Homo sapiens feline sarcoma oncogene (FES), transcript variant 1, mRNA.
RefSeq Summary (NM_002005): This gene encodes the human cellular counterpart of a feline sarcoma retrovirus protein with transforming capabilities. The gene product has tyrosine-specific protein kinase activity and that activity is required for maintenance of cellular transformation. Its chromosomal location has linked it to a specific translocation event identified in patients with acute promyelocytic leukemia but it is also involved in normal hematopoiesis as well as growth factor and cytokine receptor signaling. Alternative splicing results in multiple variants encoding different isoforms.[provided by RefSeq, Jan 2009].
Transcript (Including UTRs)
   Position: hg19 chr15:91,427,665-91,439,006 Size: 11,342 Total Exon Count: 19 Strand: +
Coding Region
   Position: hg19 chr15:91,428,276-91,438,788 Size: 10,513 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:91,427,665-91,439,006)mRNA (may differ from genome)Protein (822 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FES_HUMAN
DESCRIPTION: RecName: Full=Tyrosine-protein kinase Fes/Fps; EC=2.7.10.2; AltName: Full=Feline sarcoma/Fujinami avian sarcoma oncogene homolog; AltName: Full=Proto-oncogene c-Fes; AltName: Full=Proto-oncogene c-Fps; AltName: Full=p93c-fes;
FUNCTION: Tyrosine-protein kinase that acts downstream of cell surface receptors and plays a role in the regulation of the actin cytoskeleton, microtubule assembly, cell attachment and cell spreading. Plays a role in FCER1 (high affinity immunoglobulin epsilon receptor)-mediated signaling in mast cells. Acts down- stream of the activated FCER1 receptor and the mast/stem cell growth factor receptor KIT. Plays a role in the regulation of mast cell degranulation. Plays a role in the regulation of cell differentiation and promotes neurite outgrowth in response to NGF signaling. Plays a role in cell scattering and cell migration in response to HGF-induced activation of EZR. Phosphorylates BCR and down-regulates BCR kinase activity. Phosphorylates HCLS1/HS1, PECAM1, STAT3 and TRIM28.
CATALYTIC ACTIVITY: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
ENZYME REGULATION: Kinase activity is tightly regulated. Activated in response to signaling from a cell surface receptor. Activation probably requires binding of a substrate via the SH2 domain, plus autophosphorylation at Tyr-713. Present in an inactive form in the absence of activating stimuli.
SUBUNIT: Homooligomer. Interacts with BCR. Interacts (when activated, via coiled coil domain) with TRIM28. Interacts (via SH2 domain) with phosphorylated EZR, MS4A2/FCER1B and HCLS1/HS1. Interacts with phosphorylated KIT. Interacts with FLT3. Interacts (via FCH domain) with soluble tubulin. Interacts (via SH2 domain) with microtubules.
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Cytoplasm, cytoskeleton. Cell membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasmic vesicle. Golgi apparatus. Cell junction, focal adhesion. Note=Distributed throughout the cytosol when the kinase is not activated. Association with microtubules requires activation of the kinase activity. Shuttles between focal adhesions and cell-cell contacts in epithelial cells. Recruited to the lateral cell membrane in polarized epithelial cells by interaction with phosphorylated EZR. Detected at tubular membrane structures in the cytoplasm and at the cell periphery.
TISSUE SPECIFICITY: Widely expressed. Detected in adult colon epithelium.
DOMAIN: The coiled coil domains are important for regulating the kinase activity. They mediate homooligomerization and probably also interaction with other proteins.
DOMAIN: The N-terminal region including the first coiled coil domain mediates interaction with phosphoinositide-containing membranes.
PTM: Autophosphorylated on Tyr-713. Phosphorylated by LYN in response to FCER1 activation. Phosphorylated by HCK.
DISEASE: Note=Has been shown to act as proto-oncogene in some types of cancer, possibly due to abnormal activation of the kinase. Has been shown to act as tumor suppressor in other types of cancer. Expressed and present as activated kinase in a subset of acute myeloid leukemia patients; promotes survival of leukemia cells (PubMed:20111072). Expression is absent in K562 leukemia cells; ectopic expression of FSP/FES restores myeloid differentiation (PubMed:2656706). May function as tumor suppressor in colorectal cancer; expression is reduced or absent in samples from some colon cancer patients (PubMed:16455651). Ectopic expression of FSP/FES suppresses anchorage-independent growth in colon cancer cell lines (PubMed:16455651). Up-regulated in prostate cancer, and might be a predictor of recurrence after radical surgery (PubMed:21563194). May promote growth of renal carcinoma cells (PubMed:19082481).
MISCELLANEOUS: Cellular homolog of retroviral oncogenes. In constrast to the viral oncoproteins, the kinase activity of cellular FSP/FES is tightly regulated, and the kinase is inactive in normal cells in the absence of activating stimuli (PubMed:15485904).
SIMILARITY: Belongs to the protein kinase superfamily. Tyr protein kinase family. Fes/fps subfamily.
SIMILARITY: Contains 1 FCH domain.
SIMILARITY: Contains 1 protein kinase domain.
SIMILARITY: Contains 1 SH2 domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): FES
CDC HuGE Published Literature: FES
Positive Disease Associations: Blood Pressure , Hypertension
Related Studies:
  1. Blood Pressure
    Louise V Wain et al. Nature genetics 2011, Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure., Nature genetics. [PubMed 21909110]
  2. Blood Pressure
    Georg B Ehret et al. Nature 2011, Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk., Nature. [PubMed 21909115]
  3. Hypertension
    Georg B Ehret et al. Nature 2011, Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk., Nature. [PubMed 21909115]
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: FES
Diseases sorted by gene-association score: sarcoma (22), leukemia, acute promyelocytic, somatic (1), bone ewing's sarcoma (1), xanthinuria (1), wolfram syndrome 2 (1), warsaw breakage syndrome (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 78.96 RPKM in Spleen
Total median expression: 453.75 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -53.70119-0.451 Picture PostScript Text
3' UTR -75.62218-0.347 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001060 - FCH
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR001245 - Ser-Thr/Tyr_kinase_cat_dom
IPR000980 - SH2
IPR008266 - Tyr_kinase_AS
IPR020635 - Tyr_kinase_cat_dom
IPR016250 - Tyr_kinase_non-rcpt_Fes_subgr

Pfam Domains:
PF00017 - SH2 domain
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)
55550 - SH2 domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1WQU - NMR MuPIT 2DCR - NMR MuPIT 3BKB - X-ray MuPIT 3CBL - X-ray MuPIT 3CD3 - X-ray MuPIT 4DYL - X-ray MuPIT 4E93 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P07332
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0004715 non-membrane spanning protein tyrosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0008289 lipid binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0034987 immunoglobulin receptor binding
GO:0035091 phosphatidylinositol binding

Biological Process:
GO:0001578 microtubule bundle formation
GO:0006468 protein phosphorylation
GO:0006935 chemotaxis
GO:0007098 centrosome cycle
GO:0007173 epidermal growth factor receptor signaling pathway
GO:0007275 multicellular organism development
GO:0008283 cell proliferation
GO:0008360 regulation of cell shape
GO:0010976 positive regulation of neuron projection development
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0030155 regulation of cell adhesion
GO:0031116 positive regulation of microtubule polymerization
GO:0038083 peptidyl-tyrosine autophosphorylation
GO:0042127 regulation of cell proliferation
GO:0043304 regulation of mast cell degranulation
GO:0045087 innate immune response
GO:0045595 regulation of cell differentiation
GO:0045639 positive regulation of myeloid cell differentiation
GO:0046777 protein autophosphorylation
GO:0060627 regulation of vesicle-mediated transport
GO:2000145 regulation of cell motility
GO:2000251 positive regulation of actin cytoskeleton reorganization

Cellular Component:
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005925 focal adhesion
GO:0015630 microtubule cytoskeleton
GO:0016020 membrane
GO:0030054 cell junction
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane
GO:0031410 cytoplasmic vesicle


-  Descriptions from all associated GenBank mRNAs
  AK300605 - Homo sapiens cDNA FLJ53925 complete cds, highly similar to Proto-oncogene tyrosine-protein kinase Fes/Fps (EC 2.7.10.2).
AK309530 - Homo sapiens cDNA, FLJ99571.
AK300595 - Homo sapiens cDNA FLJ50868 complete cds, highly similar to Proto-oncogene tyrosine-protein kinase Fes/Fps (EC 2.7.10.2).
AK312545 - Homo sapiens cDNA, FLJ92916, Homo sapiens feline sarcoma oncogene (FES), mRNA.
X52192 - H.sapiens RNA for c-fes.
BC035357 - Homo sapiens feline sarcoma oncogene, mRNA (cDNA clone MGC:34142 IMAGE:5170548), complete cds.
JD409063 - Sequence 390087 from Patent EP1572962.
DQ891350 - Synthetic construct clone IMAGE:100003980; FLH171298.01X; RZPDo839H03100D feline sarcoma oncogene (FES) gene, encodes complete protein.
DQ894530 - Synthetic construct Homo sapiens clone IMAGE:100008990; FLH171294.01L; RZPDo839H0399D feline sarcoma oncogene (FES) gene, encodes complete protein.
AB590559 - Synthetic construct DNA, clone: pFN21AB5773, Homo sapiens FES gene for feline sarcoma oncogene, without stop codon, in Flexi system.
AY513654 - Homo sapiens proto-oncogene c-fes variant 1 mRNA, complete cds, alternatively spliced.
AY513655 - Homo sapiens proto-oncogene c-fes variant 2 mRNA, complete cds, alternatively spliced.
AY513656 - Homo sapiens proto-oncogene c-fes variant 3 mRNA, complete cds, alternatively spliced.
AY513657 - Homo sapiens proto-oncogene c-fes variant 4 mRNA, complete cds, alternatively spliced.
M14209 - Homo sapiens fes/fps proto-oncogene (FES) mRNA, partial cds.
JD310965 - Sequence 291989 from Patent EP1572962.
JD222805 - Sequence 203829 from Patent EP1572962.
JD149534 - Sequence 130558 from Patent EP1572962.
JD272270 - Sequence 253294 from Patent EP1572962.
JD338391 - Sequence 319415 from Patent EP1572962.
JD198674 - Sequence 179698 from Patent EP1572962.
JD227234 - Sequence 208258 from Patent EP1572962.
JD150965 - Sequence 131989 from Patent EP1572962.
JD459340 - Sequence 440364 from Patent EP1572962.
JD455565 - Sequence 436589 from Patent EP1572962.
JD254444 - Sequence 235468 from Patent EP1572962.
JD133400 - Sequence 114424 from Patent EP1572962.
JD163876 - Sequence 144900 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04360 - Axon guidance

Reactome (by CSHL, EBI, and GO)

Protein P07332 (Reactome details) participates in the following event(s):

R-HSA-399934 Phosphorylation of Plexin-A
R-HSA-399941 Rac1 binds PlexinA
R-HSA-399947 Tyrosine phosphorylation of CRMPs by Fes
R-HSA-205328 Interaction of other tyrosine kinases with p-KIT
R-HSA-399928 Recruitment of Rnd1 to Plexin A
R-HSA-399930 Activation of PAK by Rac1
R-HSA-399939 Autophosphorylation of PAK
R-HSA-399952 Phosphorylation of LIMK-1 by PAK
R-HSA-399935 Inactivation of R-Ras by Sema3A-Plexin-A GAP activity
R-HSA-399955 SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion
R-HSA-399956 CRMPs in Sema3A signaling
R-HSA-1433557 Signaling by SCF-KIT
R-HSA-373755 Semaphorin interactions
R-HSA-399954 Sema3A PAK dependent Axon repulsion
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-422475 Axon guidance
R-HSA-162582 Signal Transduction
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: B2R6E6, B4DUD0, E9PC94, E9PC95, FES_HUMAN, FPS, NM_002005, NP_001996, P07332, Q2VXS7, Q2VXS8, Q2VXT0, Q6GTU5
UCSC ID: uc002bpv.3
RefSeq Accession: NM_002005
Protein: P07332 (aka FES_HUMAN)
CCDS: CCDS10365.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_002005.3
exon count: 19CDS single in 3' UTR: no RNA size: 2783
ORF size: 2469CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2669.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.