Human Gene CCDC102A (uc002elw.3)
Description: Homo sapiens coiled-coil domain containing 102A (CCDC102A), mRNA.
Transcript (Including UTRs)
Position: hg19 chr16:57,546,090-57,570,477 Size: 24,388 Total Exon Count: 9 Strand: -
Coding Region
Position: hg19 chr16:57,546,653-57,563,089 Size: 16,437 Coding Exon Count: 8
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF01576 - Myosin tail
ModBase Predicted Comparative 3D Structure on Q96A19
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC009941 - Homo sapiens coiled-coil domain containing 102A, mRNA (cDNA clone MGC:13119 IMAGE:4100726), complete cds.LF208239 - JP 2014500723-A/15742: Polycomb-Associated Non-Coding RNAs.BC004307 - Homo sapiens coiled-coil domain containing 102A, mRNA (cDNA clone IMAGE:3626861), partial cds.BC008285 - Homo sapiens coiled-coil domain containing 102A, mRNA (cDNA clone MGC:10992 IMAGE:3637387), complete cds.JD425983 - Sequence 407007 from Patent EP1572962.JD393388 - Sequence 374412 from Patent EP1572962.JD483478 - Sequence 464502 from Patent EP1572962.JD453387 - Sequence 434411 from Patent EP1572962.JD382788 - Sequence 363812 from Patent EP1572962.JD371430 - Sequence 352454 from Patent EP1572962.JD097536 - Sequence 78560 from Patent EP1572962.JD450812 - Sequence 431836 from Patent EP1572962.JD134880 - Sequence 115904 from Patent EP1572962.JD267888 - Sequence 248912 from Patent EP1572962.JD503573 - Sequence 484597 from Patent EP1572962.DQ892649 - Synthetic construct clone IMAGE:100005279; FLH188630.01X; RZPDo839E0573D coiled-coil domain containing 102A (CCDC102A) gene, encodes complete protein.DQ895888 - Synthetic construct Homo sapiens clone IMAGE:100010348; FLH188626.01L; RZPDo839E0563D coiled-coil domain containing 102A (CCDC102A) gene, encodes complete protein.LF373747 - JP 2014500723-A/181250: Polycomb-Associated Non-Coding RNAs.LF373751 - JP 2014500723-A/181254: Polycomb-Associated Non-Coding RNAs.LF373753 - JP 2014500723-A/181256: Polycomb-Associated Non-Coding RNAs.LF373754 - JP 2014500723-A/181257: Polycomb-Associated Non-Coding RNAs.LF373755 - JP 2014500723-A/181258: Polycomb-Associated Non-Coding RNAs.JD128367 - Sequence 109391 from Patent EP1572962.JD458201 - Sequence 439225 from Patent EP1572962.JD129062 - Sequence 110086 from Patent EP1572962.JD211597 - Sequence 192621 from Patent EP1572962.JD192148 - Sequence 173172 from Patent EP1572962.MA443816 - JP 2018138019-A/15742: Polycomb-Associated Non-Coding RNAs.MA609324 - JP 2018138019-A/181250: Polycomb-Associated Non-Coding RNAs.MA609328 - JP 2018138019-A/181254: Polycomb-Associated Non-Coding RNAs.MA609330 - JP 2018138019-A/181256: Polycomb-Associated Non-Coding RNAs.MA609331 - JP 2018138019-A/181257: Polycomb-Associated Non-Coding RNAs.MA609332 - JP 2018138019-A/181258: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: C102A_HUMAN, NM_033212, NP_149989, Q96A19, Q9BT74UCSC ID: uc002elw.3RefSeq Accession: NM_033212
Protein: Q96A19
(aka C102A_HUMAN)
CCDS: CCDS10784.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_033212.3
exon count:
9 CDS single in 3' UTR:
no
RNA size:
2450
ORF size:
1653 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
3458.00 frame shift in genome:
no
% Coverage:
99.14
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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