Human Gene SNORD49A (uc010cpg.1) Description and Page Index
  Description: Homo sapiens small nucleolar RNA, C/D box 49A (SNORD49A), small nucleolar RNA.
Transcript (Including UTRs)
   Position: hg19 chr17:16,343,350-16,343,420 Size: 71 Total Exon Count: 1 Strand: +

Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr17:16,343,350-16,343,420)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerHGNCLynxPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 166.88 RPKM in Cells - Transformed fibroblasts
Total median expression: 3476.06 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  AK311247 - Homo sapiens cDNA, FLJ18289.
X96649 - H.sapiens mRNA for U49 small nuclear RNA.
DQ571511 - Homo sapiens piRNA piR-31623, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_002744
UCSC ID: uc010cpg.1
RefSeq Accession: NR_002744

-  Gene Model Information
category: noncoding nonsense-mediated-decay: no RNA accession: NR_002744.1
exon count: 1CDS single in 3' UTR: no RNA size: 71
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 184.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.