Human Gene RGS18 (uc001gsg.3)
  Description: Homo sapiens regulator of G-protein signaling 18 (RGS18), mRNA.
RefSeq Summary (NM_130782): This gene encodes a member of the regulator of G-protein signaling family. This protein is contains a conserved, 120 amino acid motif called the RGS domain. The protein attenuates the signaling activity of G-proteins by binding to activated, GTP-bound G alpha subunits and acting as a GTPase activating protein (GAP), increasing the rate of conversion of the GTP to GDP. This hydrolysis allows the G alpha subunits to bind G beta/gamma subunit heterodimers, forming inactive G-protein heterotrimers, thereby terminating the signal. Alternate transcriptional splice variants of this gene have been observed but have not been thoroughly characterized. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr1:192,127,592-192,154,945 Size: 27,354 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr1:192,127,768-192,153,684 Size: 25,917 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:192,127,592-192,154,945)mRNA (may differ from genome)Protein (235 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RGS18_HUMAN
DESCRIPTION: RecName: Full=Regulator of G-protein signaling 18; Short=RGS18;
FUNCTION: Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to G(i) alpha-1, G(i) alpha- 2, G(i) alpha-3 and G(q) alpha.
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
TISSUE SPECIFICITY: Expressed in peripheral leukocytes, bone marrow, platelet, spleen and fetal liver.
SIMILARITY: Contains 1 RGS domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): RGS18
CDC HuGE Published Literature: RGS18

-  MalaCards Disease Associations
  MalaCards Gene Search: RGS18
Diseases sorted by gene-association score: cardiomyopathy, familial hypertrophic (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.22 RPKM in Whole Blood
Total median expression: 37.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -36.89176-0.210 Picture PostScript Text
3' UTR -272.641261-0.216 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000342 - Regulat_G_prot_signal
IPR024066 - Regulat_G_prot_signal_dom1
IPR016137 - Regulat_G_prot_signal_superfam

Pfam Domains:
PF00615 - Regulator of G protein signaling domain

SCOP Domains:
48097 - Regulator of G-protein signaling, RGS

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DLV - NMR MuPIT 2JM5 - NMR MuPIT 2OWI - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9NS28
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity
GO:0005515 protein binding

Biological Process:
GO:0007186 G-protein coupled receptor signaling pathway
GO:0008277 regulation of G-protein coupled receptor protein signaling pathway
GO:0009968 negative regulation of signal transduction
GO:0043547 positive regulation of GTPase activity

Cellular Component:
GO:0005737 cytoplasm
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  AK292015 - Homo sapiens cDNA FLJ78111 complete cds, highly similar to Homo sapiens regulator of G-protein signalling 18 (RGS18), mRNA.
BC020632 - Homo sapiens regulator of G-protein signaling 18, mRNA (cDNA clone MGC:22266 IMAGE:4714909), complete cds.
AK315377 - Homo sapiens cDNA, FLJ96423, Homo sapiens regulator of G-protein signalling 18 (RGS18), mRNA.
AK057114 - Homo sapiens cDNA FLJ32552 fis, clone SPLEN1000089, highly similar to Regulator of G-protein signaling 18.
AF268036 - Homo sapiens regulator of G-protein signaling 18 mRNA, complete cds.
AF076642 - Homo sapiens regulator of G-protein signaling 13 mRNA, complete cds.
AB528030 - Synthetic construct DNA, clone: pF1KB6952, Homo sapiens RGS18 gene for regulator of G-protein signaling 18, without stop codon, in Flexi system.
DQ894569 - Synthetic construct Homo sapiens clone IMAGE:100009029; FLH176492.01L; RZPDo839D12121D regulator of G-protein signalling 18 (RGS18) gene, encodes complete protein.
CU676590 - Synthetic construct Homo sapiens gateway clone IMAGE:100022156 5' read RGS18 mRNA.
DQ891393 - Synthetic construct clone IMAGE:100004023; FLH176496.01X; RZPDo839D12122D regulator of G-protein signalling 18 (RGS18) gene, encodes complete protein.
KJ899459 - Synthetic construct Homo sapiens clone ccsbBroadEn_08853 RGS18 gene, encodes complete protein.
JD082441 - Sequence 63465 from Patent EP1572962.
JD507140 - Sequence 488164 from Patent EP1572962.
JD509359 - Sequence 490383 from Patent EP1572962.
JD052496 - Sequence 33520 from Patent EP1572962.
JD502010 - Sequence 483034 from Patent EP1572962.
JD549185 - Sequence 530209 from Patent EP1572962.
JD246472 - Sequence 227496 from Patent EP1572962.
JD509192 - Sequence 490216 from Patent EP1572962.
JD168170 - Sequence 149194 from Patent EP1572962.
JD285684 - Sequence 266708 from Patent EP1572962.
JD048974 - Sequence 29998 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RD23, NM_130782, NP_570138, Q9NS28, RGS13, RGS18_HUMAN
UCSC ID: uc001gsg.3
RefSeq Accession: NM_130782
Protein: Q9NS28 (aka RGS18_HUMAN or RGSI_HUMAN)
CCDS: CCDS1374.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_130782.2
exon count: 5CDS single in 3' UTR: no RNA size: 2158
ORF size: 708CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1559.00frame shift in genome: no % Coverage: 99.40
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.