Human Gene AX747192 (uc001nyr.1)
  Description: Homo sapiens cDNA FLJ34477 fis, clone HLUNG2003833.
Transcript (Including UTRs)
   Position: hg19 chr11:63,996,625-63,998,760 Size: 2,136 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr11:63,997,504-63,998,328 Size: 825 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersGene AllelesMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:63,996,625-63,998,760)mRNA (may differ from genome)Protein (274 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerGeneCards
MGIPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -163.50432-0.378 Picture PostScript Text
3' UTR -354.70879-0.404 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  CU675262 - Synthetic construct Homo sapiens gateway clone IMAGE:100018787 3' read NUDT22 mRNA.
AK091796 - Homo sapiens cDNA FLJ34477 fis, clone HLUNG2003833.
AX747192 - Sequence 717 from Patent EP1308459.
JD146775 - Sequence 127799 from Patent EP1572962.
JD100041 - Sequence 81065 from Patent EP1572962.
JD365367 - Sequence 346391 from Patent EP1572962.
JD540538 - Sequence 521562 from Patent EP1572962.
JD486350 - Sequence 467374 from Patent EP1572962.
JD045762 - Sequence 26786 from Patent EP1572962.
JD131511 - Sequence 112535 from Patent EP1572962.
JD089703 - Sequence 70727 from Patent EP1572962.
JD450143 - Sequence 431167 from Patent EP1572962.
JD419261 - Sequence 400285 from Patent EP1572962.
JD172268 - Sequence 153292 from Patent EP1572962.
JD073088 - Sequence 54112 from Patent EP1572962.
JD474450 - Sequence 455474 from Patent EP1572962.
JD224995 - Sequence 206019 from Patent EP1572962.
JD306467 - Sequence 287491 from Patent EP1572962.
JD206061 - Sequence 187085 from Patent EP1572962.
JD484551 - Sequence 465575 from Patent EP1572962.
JD138730 - Sequence 119754 from Patent EP1572962.
JD265808 - Sequence 246832 from Patent EP1572962.
JD139073 - Sequence 120097 from Patent EP1572962.
JD419200 - Sequence 400224 from Patent EP1572962.
JD259482 - Sequence 240506 from Patent EP1572962.
JD068097 - Sequence 49121 from Patent EP1572962.
JD382464 - Sequence 363488 from Patent EP1572962.
JD499896 - Sequence 480920 from Patent EP1572962.
JD302534 - Sequence 283558 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc001nyr.1
Representative RNA: AX747192

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AX747192.1
exon count: 1CDS single in 3' UTR: no RNA size: 2137
ORF size: 825CDS single in intron: no Alignment % ID: 99.81
txCdsPredict score: 1589.50frame shift in genome: no % Coverage: 99.95
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.