Human Gene HTATIP2 (uc001mpx.2)
Description: Homo sapiens HIV-1 Tat interactive protein 2, 30kDa (HTATIP2), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr11:20,385,289-20,405,329 Size: 20,041 Total Exon Count: 6 Strand: +
Coding Region
Position: hg19 chr11:20,385,358-20,404,751 Size: 19,394 Coding Exon Count: 6
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
D001564
Benzo(a)pyrene
D004997
Ethinyl Estradiol
D005047
Etoposide
D005472
Fluorouracil
D013749
Tetrachlorodibenzodioxin
D014635
Valproic Acid
C029141
2,2,5,7,8-pentamethyl-1-hydroxychroman
C014211
2,3,7,8-tetrachlorodibenzofuran
C014024
2,4,5,2',4',5'-hexachlorobiphenyl
C016403
2,4-dinitrotoluene
more ... click here to view the complete list
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF13460 - NAD(P)H-binding
SCOP Domains: 51735 - NAD(P)-binding Rossmann-fold domains
ModBase Predicted Comparative 3D Structure on Q9BUP3-3
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AK292092 - Homo sapiens cDNA FLJ75232 complete cds, highly similar to Homo sapiens HIV-1 Tat interactive protein 2, 30kDa (HTATIP2), mRNA.BC002439 - Homo sapiens HIV-1 Tat interactive protein 2, 30kDa, mRNA (cDNA clone MGC:1318 IMAGE:3346984), complete cds.JD476312 - Sequence 457336 from Patent EP1572962.JD152661 - Sequence 133685 from Patent EP1572962.JD405942 - Sequence 386966 from Patent EP1572962.AF092095 - Homo sapiens alternatively spliced product of metastasis-suppressor gene CC3 (TC3) mRNA, complete cds.U69161 - Homo sapiens CC3 (CC3) mRNA, complete cds.AK223010 - Homo sapiens mRNA for HIV-1 Tat interactive protein 2, 30kDa variant, clone: HSI15163.BC015358 - Homo sapiens HIV-1 Tat interactive protein 2, 30kDa, mRNA (cDNA clone MGC:21465 IMAGE:3455757), complete cds.AK222969 - Homo sapiens mRNA for HIV-1 Tat interactive protein 2, 30kDa variant, clone: HSI01981.EU446982 - Synthetic construct Homo sapiens clone IMAGE:100069837; IMAGE:100012191; FLH258615.01L HIV-1 Tat interactive protein 2, 30kDa (HTATIP2) gene, encodes complete protein.AF039103 - Homo sapiens Tat-interacting protein TIP30 mRNA, complete cds.KJ898239 - Synthetic construct Homo sapiens clone ccsbBroadEn_07633 HTATIP2 gene, encodes complete protein.AB463744 - Synthetic construct DNA, clone: pF1KB7510, Homo sapiens HTATIP2 gene for HIV-1 Tat interactive protein 2, 30kDa, without stop codon, in Flexi system.CR456821 - Homo sapiens full open reading frame cDNA clone RZPDo834F0215D for gene HTATIP2, HIV-1 Tat interactive protein 2, 30kDa; complete cds, incl. stopcodon.JD026504 - Sequence 7528 from Patent EP1572962.JD027629 - Sequence 8653 from Patent EP1572962.AK130473 - Homo sapiens cDNA FLJ26963 fis, clone SLV01054.JD299423 - Sequence 280447 from Patent EP1572962.JD475580 - Sequence 456604 from Patent EP1572962.JD268107 - Sequence 249131 from Patent EP1572962.JD082972 - Sequence 63996 from Patent EP1572962.JD510819 - Sequence 491843 from Patent EP1572962.JD315991 - Sequence 297015 from Patent EP1572962.JD344972 - Sequence 325996 from Patent EP1572962.
Other Names for This Gene
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001098520.1
exon count:
6 CDS single in 3' UTR:
no
RNA size:
1509
ORF size:
831 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1851.00 frame shift in genome:
no
% Coverage:
97.95
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.