The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Pfam Domains: PF06409 - Nuclear pore complex interacting protein (NPIP)
ModBase Predicted Comparative 3D Structure on Q86VD5
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Descriptions from all associated GenBank mRNAs
BC008178 - Homo sapiens hypothetical protein LOC339047, mRNA (cDNA clone IMAGE:4184431), with apparent retained intron. AF229069 - Homo sapiens KIAA0220-like protein mRNA, complete cds. BC010188 - Homo sapiens hypothetical protein LOC339047, mRNA (cDNA clone IMAGE:4546719), partial cds. KJ905658 - Synthetic construct Homo sapiens clone ccsbBroadEn_15304 PKD1P1 gene, encodes complete protein. CU692310 - Synthetic construct Homo sapiens gateway clone IMAGE:100021387 5' read LOC339047 mRNA. JD347493 - Sequence 328517 from Patent EP1572962. JD416161 - Sequence 397185 from Patent EP1572962. JD082959 - Sequence 63983 from Patent EP1572962. JD391234 - Sequence 372258 from Patent EP1572962. JD082959 - Sequence 63983 from Patent EP1572962. JD148746 - Sequence 129770 from Patent EP1572962. JD318007 - Sequence 299031 from Patent EP1572962. BC039707 - Homo sapiens hypothetical protein LOC339047, mRNA (cDNA clone MGC:47688 IMAGE:4479933), complete cds. BC010188 - Homo sapiens hypothetical protein LOC339047, mRNA (cDNA clone IMAGE:4546719), partial cds. BC046145 - Homo sapiens hypothetical protein LOC339047, mRNA (cDNA clone IMAGE:4179257), complete cds. KF175170 - Homo sapiens clone 6 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds. KF175208 - Homo sapiens clone p_1 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence. KF175210 - Homo sapiens clone p_3 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence. KF175173 - Homo sapiens clone 9 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds. KF175174 - Homo sapiens clone 10 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds. KF175213 - Homo sapiens clone p_6 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence. KF175219 - Homo sapiens clone p_12 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence. KF175209 - Homo sapiens clone p_2 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence. KF175211 - Homo sapiens clone p_4 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence. KF175212 - Homo sapiens clone p_5 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence. KF175214 - Homo sapiens clone p_7 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence. AK294177 - Homo sapiens cDNA FLJ56769 complete cds, weakly similar to Nuclear pore complex-interacting protein. AK298381 - Homo sapiens cDNA FLJ56775 complete cds, moderately similar to Nuclear pore complex-interacting protein. KF175171 - Homo sapiens clone 7 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds. KF175168 - Homo sapiens clone 4 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds. KF175169 - Homo sapiens clone 5 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds. KF175172 - Homo sapiens clone 8 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds. KF175167 - Homo sapiens clone 3 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds. KJ906490 - Synthetic construct Homo sapiens clone ccsbBroadEn_16160 PKD1P1 gene, encodes complete protein. JD047111 - Sequence 28135 from Patent EP1572962. AK304604 - Homo sapiens cDNA FLJ56871 complete cds, highly similar to Polycystin-1 precursor. DQ586845 - Homo sapiens piRNA piR-53957, complete sequence. JD510674 - Sequence 491698 from Patent EP1572962. JD462309 - Sequence 443333 from Patent EP1572962. JD267990 - Sequence 249014 from Patent EP1572962.