Human Gene STARD7-AS1 (uc002svn.3)
  Description: Homo sapiens uncharacterized STARD7-AS1 (STARD7-AS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr2:96,874,154-96,908,362 Size: 34,209 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:96,874,154-96,908,362)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.48 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 166.15 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK311432 - Homo sapiens cDNA, FLJ18474.
JD129085 - Sequence 110109 from Patent EP1572962.
LF205877 - JP 2014500723-A/13380: Polycomb-Associated Non-Coding RNAs.
JD189492 - Sequence 170516 from Patent EP1572962.
JD129809 - Sequence 110833 from Patent EP1572962.
JD406574 - Sequence 387598 from Patent EP1572962.
JD366976 - Sequence 348000 from Patent EP1572962.
LF349365 - JP 2014500723-A/156868: Polycomb-Associated Non-Coding RNAs.
JD126449 - Sequence 107473 from Patent EP1572962.
AK057419 - Homo sapiens cDNA FLJ32857 fis, clone TESTI2003541.
JD311684 - Sequence 292708 from Patent EP1572962.
JD525258 - Sequence 506282 from Patent EP1572962.
JD154638 - Sequence 135662 from Patent EP1572962.
JD277389 - Sequence 258413 from Patent EP1572962.
JD206412 - Sequence 187436 from Patent EP1572962.
JD100671 - Sequence 81695 from Patent EP1572962.
JD187073 - Sequence 168097 from Patent EP1572962.
JD385979 - Sequence 367003 from Patent EP1572962.
JD420526 - Sequence 401550 from Patent EP1572962.
JD392308 - Sequence 373332 from Patent EP1572962.
JD344879 - Sequence 325903 from Patent EP1572962.
JD250242 - Sequence 231266 from Patent EP1572962.
BC101730 - Homo sapiens hypothetical protein LOC285033, mRNA (cDNA clone MGC:126779 IMAGE:8069236), complete cds.
BC101732 - Homo sapiens hypothetical protein LOC285033, mRNA (cDNA clone MGC:126781 IMAGE:8069238), complete cds.
KJ895994 - Synthetic construct Homo sapiens clone ccsbBroadEn_05388 LOC285033 gene, encodes complete protein.
JD441693 - Sequence 422717 from Patent EP1572962.
JD108062 - Sequence 89086 from Patent EP1572962.
JD108061 - Sequence 89085 from Patent EP1572962.
JD342163 - Sequence 323187 from Patent EP1572962.
JD342162 - Sequence 323186 from Patent EP1572962.
JD228152 - Sequence 209176 from Patent EP1572962.
JD308250 - Sequence 289274 from Patent EP1572962.
JD159962 - Sequence 140986 from Patent EP1572962.
JD276463 - Sequence 257487 from Patent EP1572962.
JD106850 - Sequence 87874 from Patent EP1572962.
JD075166 - Sequence 56190 from Patent EP1572962.
JD042994 - Sequence 24018 from Patent EP1572962.
JD361805 - Sequence 342829 from Patent EP1572962.
JD550889 - Sequence 531913 from Patent EP1572962.
JD312265 - Sequence 293289 from Patent EP1572962.
JD556189 - Sequence 537213 from Patent EP1572962.
JD321879 - Sequence 302903 from Patent EP1572962.
JD111398 - Sequence 92422 from Patent EP1572962.
JD501474 - Sequence 482498 from Patent EP1572962.
JD423759 - Sequence 404783 from Patent EP1572962.
MA584942 - JP 2018138019-A/156868: Polycomb-Associated Non-Coding RNAs.
MA441454 - JP 2018138019-A/13380: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: LOC285033, NR_046322, uc002svn.2
UCSC ID: uc002svn.3
RefSeq Accession: NR_046322

-  Gene Model Information
 
category: antisense nonsense-mediated-decay: no RNA accession: NR_046322.1
exon count: 4CDS single in 3' UTR: no RNA size: 2484
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 360.00frame shift in genome: no % Coverage: 99.96
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.