Human Gene TTC5 (uc001vwt.3)
  Description: Homo sapiens tetratricopeptide repeat domain 5 (TTC5), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr14:20,757,301-20,774,153 Size: 16,853 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr14:20,757,786-20,774,096 Size: 16,311 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:20,757,301-20,774,153)mRNA (may differ from genome)Protein (440 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtPubMedReactomeTreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TTC5_HUMAN
DESCRIPTION: RecName: Full=Tetratricopeptide repeat protein 5; Short=TPR repeat protein 5; AltName: Full=Stress-responsive activator of p300; Short=Strap;
FUNCTION: Adapter protein involved in p53/TP53 response that acts by regulating and mediating the assembly of multi-protein complexes. Required to facilitate the interaction between JMY and p300/EP300 and increase p53/TP53-dependent transcription and apoptosis. Prevents p53/TP53 degradation by MDM2 (By similarity).
SUBUNIT: Interacts with JMY and p300/EP300 (By similarity).
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=Phosphorylation at Ser-203 results in nuclear localization, while unphosphorylated protein localizes to the cytoplasm (By similarity).
PTM: Phosphorylation at Ser-203 enhances protein stability, regulates nuclear accumulation and association with p300/EP300 (By similarity).
SIMILARITY: Contains 6 TPR repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.88 RPKM in Testis
Total median expression: 109.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -10.3657-0.182 Picture PostScript Text
3' UTR -160.96485-0.332 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013026 - TPR-contain_dom
IPR011990 - TPR-like_helical
IPR013105 - TPR_2
IPR019734 - TPR_repeat

Pfam Domains:
PF13181 - Tetratricopeptide repeat
PF13432 - Tetratricopeptide repeat
PF16669 - Tetratricopeptide repeat protein 5 OB fold domain

SCOP Domains:
81901 - HCP-like
48439 - Protein prenylyltransferase
48452 - TPR-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2XVS - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q8N0Z6
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
 Gene Details  Gene Details 
 Gene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
 Protein Sequence  Protein Sequence 
 Alignment  Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0005515 protein binding

Biological Process:
GO:0006281 DNA repair
GO:0006974 cellular response to DNA damage stimulus
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:1901796 regulation of signal transduction by p53 class mediator

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC008647 - Homo sapiens tetratricopeptide repeat domain 5, mRNA (cDNA clone IMAGE:3869590), partial cds.
BX640732 - Homo sapiens mRNA; cDNA DKFZp686D0419 (from clone DKFZp686D0419); complete cds.
BC053538 - Homo sapiens tetratricopeptide repeat domain 5, mRNA (cDNA clone MGC:61685 IMAGE:5225152), complete cds.
BX648584 - Homo sapiens mRNA; cDNA DKFZp686A14185 (from clone DKFZp686A14185).
BC030822 - Homo sapiens tetratricopeptide repeat domain 5, mRNA (cDNA clone MGC:23948 IMAGE:4243419), complete cds.
AK074553 - Homo sapiens cDNA FLJ90072 fis, clone HEMBA1004085.
JD317043 - Sequence 298067 from Patent EP1572962.
JD092804 - Sequence 73828 from Patent EP1572962.
JD294856 - Sequence 275880 from Patent EP1572962.
JD038088 - Sequence 19112 from Patent EP1572962.
JD367864 - Sequence 348888 from Patent EP1572962.
JD151267 - Sequence 132291 from Patent EP1572962.
JD110678 - Sequence 91702 from Patent EP1572962.
JD164752 - Sequence 145776 from Patent EP1572962.
JD316389 - Sequence 297413 from Patent EP1572962.
JD530139 - Sequence 511163 from Patent EP1572962.
BX248066 - human full-length cDNA clone CS0DJ014YO21 of T cells (Jurkat cell line) of Homo sapiens (human).
JD063631 - Sequence 44655 from Patent EP1572962.
JD181091 - Sequence 162115 from Patent EP1572962.
EU832467 - Synthetic construct Homo sapiens clone HAIB:100067496; DKFZo008C0429 tetratricopeptide repeat domain 5 protein (TTC5) gene, encodes complete protein.
HQ447721 - Synthetic construct Homo sapiens clone IMAGE:100071052; CCSB011887_03 tetratricopeptide repeat domain 5 (TTC5) gene, encodes complete protein.
KJ899930 - Synthetic construct Homo sapiens clone ccsbBroadEn_09324 TTC5 gene, encodes complete protein.
JD476283 - Sequence 457307 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8N0Z6 (Reactome details) participates in the following event(s):

R-HSA-6804229 JMY, TTC5 and EP300 bind
R-HSA-6804266 CHEK2 phosphorylates TTC5
R-HSA-6804276 ATM phosphorylates TTC5
R-HSA-6804242 TP53 binds the complex of JMY, EP300 and TTC5
R-HSA-6804379 PRMT5 binds TTC5
R-HSA-6804383 PRMT5 methylates TP53
R-HSA-6804760 Regulation of TP53 Activity through Methylation
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A8MQ18, NM_138376, NP_612385, Q8N0Z6, Q96HF9, TTC5_HUMAN
UCSC ID: uc001vwt.3
RefSeq Accession: NM_138376
Protein: Q8N0Z6 (aka TTC5_HUMAN)
CCDS: CCDS9546.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_138376.2
exon count: 10CDS single in 3' UTR: no RNA size: 1881
ORF size: 1323CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2486.00frame shift in genome: no % Coverage: 99.15
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.