Human Gene NMB (uc002bla.3)
  Description: Homo sapiens neuromedin B (NMB), transcript variant 2, mRNA.
RefSeq Summary (NM_205858): This gene encodes a member of the bombesin-like family of neuropeptides, which negatively regulate eating behavior. The encoded protein may regulate colonic smooth muscle contraction through binding to its cognate receptor, the neuromedin B receptor (NMBR). Polymorphisms of this gene may be associated with hunger, weight gain and obesity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2015].
Transcript (Including UTRs)
   Position: hg19 chr15:85,198,360-85,201,802 Size: 3,443 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr15:85,198,501-85,201,383 Size: 2,883 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersGenetic AssociationsMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:85,198,360-85,201,802)mRNA (may differ from genome)Protein (154 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCHPRDLynxMalacardsMGI
OMIMPubMedReactomeTreefamUniProtKBWikipedia
BioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): NMB
CDC HuGE Published Literature: NMB
Positive Disease Associations: Body Weight Regulation , obesity
Related Studies:
  1. Body Weight Regulation
    Oeffner F et al. 2000, Significant association between a silent polymorphism in the neuromedin B gene and body weight in German children and adolescents., Acta diabetologica. 2000 ;37(2):93-101. [PubMed 11194934]
    These results suggest a contribution of NMB or a gene in its close vicinity to genetic weight control in humans.
  2. obesity
    Oeffner, F. et al. 2000, Significant association between a silent polymorphism in the neuromedin B gene and body weight in German children and adolescents, Acta diabetologica. 2000 ;37(2):93-101. [PubMed 11194934]
    These results suggest a contribution of NMB or a gene in its close vicinity to genetic weight control in humans.

-  MalaCards Disease Associations
  MalaCards Gene Search: NMB
Diseases sorted by gene-association score: gastrinoma (12), neuronal ceroid lipofuscinosis (6), lung cancer (4), obesity (3), small cell cancer of the lung, somatic (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.76 RPKM in Adipose - Visceral (Omentum)
Total median expression: 276.47 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -234.10419-0.559 Picture PostScript Text
3' UTR -26.70141-0.189 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF02044 - Bombesin-like peptide

ModBase Predicted Comparative 3D Structure on P08949-2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Descriptions from all associated GenBank mRNAs
  BC007407 - Homo sapiens neuromedin B, mRNA (cDNA clone MGC:2277 IMAGE:3030430), complete cds.
BC007431 - Homo sapiens neuromedin B, mRNA (cDNA clone MGC:3936 IMAGE:3030430), complete cds.
BC008603 - Homo sapiens neuromedin B, mRNA (cDNA clone MGC:17211 IMAGE:4185578), complete cds.
M21551 - Human neuromedin B mRNA, complete cds.
JD090845 - Sequence 71869 from Patent EP1572962.
AL110112 - Homo sapiens EST from clone 323828, 5' end.
JD421211 - Sequence 402235 from Patent EP1572962.
KJ897249 - Synthetic construct Homo sapiens clone ccsbBroadEn_06643 NMB gene, encodes complete protein.
KR709975 - Synthetic construct Homo sapiens clone CCSBHm_00008596 NMB (NMB) mRNA, encodes complete protein.
JD237844 - Sequence 218868 from Patent EP1572962.
KJ905837 - Synthetic construct Homo sapiens clone ccsbBroadEn_15507 NMB gene, encodes complete protein.
JD056606 - Sequence 37630 from Patent EP1572962.
JD127459 - Sequence 108483 from Patent EP1572962.
JD474723 - Sequence 455747 from Patent EP1572962.
JD228817 - Sequence 209841 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04080 - Neuroactive ligand-receptor interaction

Reactome (by CSHL, EBI, and GO)

Protein P08949 (Reactome details) participates in the following event(s):

R-HSA-375384 Bombesin-like receptors bind bombesin homologues
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: NM_205858, NP_995580, P08949-2
UCSC ID: uc002bla.3
RefSeq Accession: NM_205858
Protein: P08949-2, splice isoform of P08949 CCDS: CCDS42076.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_205858.1
exon count: 3CDS single in 3' UTR: no RNA size: 1041
ORF size: 465CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 818.00frame shift in genome: no % Coverage: 98.46
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.