Human Gene C8orf58 (uc003xce.3)
Description: Homo sapiens chromosome 8 open reading frame 58 (C8orf58), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr8:22,457,114-22,461,662 Size: 4,549 Total Exon Count: 7 Strand: +
Coding Region
Position: hg19 chr8:22,457,234-22,460,819 Size: 3,586 Coding Exon Count: 7
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: CH058_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C8orf58;
SEQUENCE CAUTION: Sequence=BAC03795.1; Type=Erroneous initiation;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF15552 - Domain of unknown function (DUF4657)
ModBase Predicted Comparative 3D Structure on Q8NAV2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AK295405 - Homo sapiens cDNA FLJ56347 complete cds.LP896504 - Sequence 1368 from Patent EP3253886.LF210144 - JP 2014500723-A/17647: Polycomb-Associated Non-Coding RNAs.AK092034 - Homo sapiens cDNA FLJ34715 fis, clone MESAN2004575.AX747326 - Sequence 851 from Patent EP1308459.BC012750 - Homo sapiens chromosome 8 open reading frame 58, mRNA (cDNA clone MGC:16089 IMAGE:3618901), complete cds.JD463689 - Sequence 444713 from Patent EP1572962.JD086602 - Sequence 67626 from Patent EP1572962.JD074594 - Sequence 55618 from Patent EP1572962.JD203919 - Sequence 184943 from Patent EP1572962.CU680390 - Synthetic construct Homo sapiens gateway clone IMAGE:100022385 5' read C8orf58 mRNA.HQ447698 - Synthetic construct Homo sapiens clone IMAGE:100071026; CCSB013463_01 chromosome 8 open reading frame 58 (C8orf58) gene, encodes complete protein.KJ904315 - Synthetic construct Homo sapiens clone ccsbBroadEn_13709 C8orf58 gene, encodes complete protein.LF335089 - JP 2014500723-A/142592: Polycomb-Associated Non-Coding RNAs.DQ593874 - Homo sapiens piRNA piR-33986, complete sequence.JD264411 - Sequence 245435 from Patent EP1572962.JD479371 - Sequence 460395 from Patent EP1572962.JD199039 - Sequence 180063 from Patent EP1572962.JD258089 - Sequence 239113 from Patent EP1572962.JD047831 - Sequence 28855 from Patent EP1572962.JD291053 - Sequence 272077 from Patent EP1572962.JD393285 - Sequence 374309 from Patent EP1572962.JD133017 - Sequence 114041 from Patent EP1572962.JD361705 - Sequence 342729 from Patent EP1572962.JD331953 - Sequence 312977 from Patent EP1572962.JD491609 - Sequence 472633 from Patent EP1572962.JD421061 - Sequence 402085 from Patent EP1572962.MA445721 - JP 2018138019-A/17647: Polycomb-Associated Non-Coding RNAs.MA570666 - JP 2018138019-A/142592: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001013842.2
exon count:
7 CDS single in 3' UTR:
no
RNA size:
2062
ORF size:
1098 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2396.00 frame shift in genome:
no
% Coverage:
99.95
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.