Human Gene TRBV5-1 (uc011krr.1)
  Description: SubName: Full=V_segment translation product; Flags: Fragment;
Transcript (Including UTRs)
   Position: hg19 chr7:142,020,709-142,470,314 Size: 449,606 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr7:142,020,894-142,470,314 Size: 449,421 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:142,020,709-142,470,314)mRNA (may differ from genome)Protein (118 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldEnsembl
ExonPrimerGeneCardsHGNCMGIPubMedTreefam
UniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.31 RPKM in Whole Blood
Total median expression: 5.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -61.50185-0.332 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR013106 - Ig_V-set

Pfam Domains:
PF07686 - Immunoglobulin V-set domain

SCOP Domains:
48726 - Immunoglobulin

ModBase Predicted Comparative 3D Structure on A0A578
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0002250 adaptive immune response
GO:0002376 immune system process

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  MG192572 - Homo sapiens isolate ACL_NN12_G10 T cell receptor beta mRNA, partial cds.
AK097858 - Homo sapiens cDNA FLJ40539 fis, clone THYMU1000536.
AB977621 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: EEM(1)-TRB21.
AB749839 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: F_39_beta.
AB749857 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: I_37_beta.
AB305936 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 318.
AB749895 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: T_45_beta.
AB749835 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: F_09_beta.
AB978019 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: LEM(3)-TRB129.
AB978212 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB170.
AB978006 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: LEM(3)-TRB68.
AB978225 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB183.
AB305845 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 116.
AB306233 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: un 211.
AB305870 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 179.
AB978201 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB159.
AB977560 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: CM(1)-TRB14.
AB978001 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: LEM(3)-TRB33.
AB306259 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: un 275.
AB978099 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB56.
AB749823 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: E_02_beta.
AB978226 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB184.
M97715 - Human T-cell receptor (V beta 5.1, J beta 2.7, C beta 2) mRNA.
AB977737 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: N(2)-TRB110.
AB977598 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: CM(1)-TRB72.
AB978267 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB231.
AB977605 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: CM(1)-TRB92.
AF020652 - Homo sapiens T cell receptor beta chain variable region (BV5S1A1T) mRNA, partial cds.
AF020653 - Homo sapiens T cell receptor alpha chain variable region (AV30S1) mRNA, partial cds.
AB305898 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 232.
X58328 - H.sapiens TCRB CK4 mRNA.
X04927 - Human mRNA for T-cell receptor beta-chain (clone HBVP51) (Family Member: V beta 5.4, D beta 2.1, J beta 2.2, C beta 2).
AF272741 - Homo sapiens clone 18030.D23 T cell receptor beta chain mRNA, partial cds.
GU122927 - Homo sapiens 1.9 T cell receptor beta mRNA, complete cds.
JQ778266 - Homo sapiens clone 26 TCR beta chain mRNA, complete cds.
BC030533 - Homo sapiens T cell receptor beta constant 1, mRNA (cDNA clone IMAGE:5218466).
AB978233 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB191.
AB977728 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: N(2)-TRB54.
AB978082 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB39.
AB977964 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: CM(3)-TRB169.
AB305890 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 218.
AB978065 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB22.
AF430648 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1AT-PGQGAYEQYF-2.7 mRNA, partial cds.
AF430649 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-GGGTGELFF-Jbeta2.2 mRNA, partial cds.
AF430651 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-RTRTGETNTGELFF-JBeta2.2 mRNA, partial cds.
AF430655 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-VIGTYEQYF-Jbeta 2.7 mRNA, partial cds.
AF430660 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-EFQAPYGYTF-Jbeta1.2 mRNA, partial cds.
AF430662 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-AWWGAGYEGYF-Jbeta 2.7 mRNA, partial cds.
AF430663 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-SGQVTGELFF-Jbeta 2.2 mRNA, partial cds.
AF430664 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-DATGNLNEQYF-Jbeta 2.7 mRNA, partial cds.
AF430665 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-DPSGGYNEQFF-Jbeta 2.1 mRNA, partial cds.
AF430666 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-FDFPGELFF-Jbeta 2.2 mRNA, partial cds.
AF430669 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-FSKGVTEAFF-Jbeta 1.1 mRNA, partial cds.
AF430674 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1TSDLSGANVLTF-Jbeta 2.6 mRNA, partial cds.
AF430675 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-APLTGDSGNTIYF-Jbeta 1.3 mRNA, partial cds.
AF430679 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-FGGEDTDTQYF-Jbeta 2.3 mRNA, partial cds.
AF430680 - Homo sapiens T cell receptor beta variable region, Vbeta 5 S3A1T/S1A1T-RRSDTQYF-Jbeta 2.3 mRNA, partial cds.
AF430653 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-VSGRGSYEQYF-Jbeta 2.7 mRNA, partial cds.
AB978249 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB207.
AB977832 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: LEM(2)-TRB25.
AB977778 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: CM(2)-TRB56.
AB977799 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: CM(2)-TRB152.
AB977938 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: CM(3)-TRB17.
AB978089 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: Donor4-TRB46.
AB977661 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: LEM(1)-TRB40-1.
AB977662 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: LEM(1)-TRB40-2.
AF430661 - Homo sapiens T cell receptor beta variable region, Vbeta 5S1A1T-RRLAGVYNEQFF-Jbeta 2.1 mRNA, partial cds.
AB305953 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 351.
AB305895 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 225.
JN695578 - Homo sapiens isolate NE11 T cell receptor beta chain (TRB) mRNA, partial cds.
AB977780 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: CM(2)-TRB61.
AB977675 - Homo sapiens mRNA for T cell receptor beta chain V-D-J-region, partial cds, isolate: LEM(1)-TRB85.
X92789 - H.sapiens mRNA for T cell receptor beta (clone XPTF1I).
EF592029 - Homo sapiens subject 13 clone 48 T-cell receptor beta chain mRNA, partial cds.
EF591998 - Homo sapiens clone 10532-37 T cell receptor mRNA, partial cds.
AF272740 - Homo sapiens clone 115 p175b.33 T cell receptor beta chain mRNA, partial cds.
EF592019 - Homo sapiens clone 11563-54 T cell receptor mRNA, partial cds.
GQ502894 - Homo sapiens isolate 12 clone 42 T cell receptor beta chain mRNA, partial cds.
EF592003 - Homo sapiens subject 9 clone 62 T-cell receptor beta chain mRNA, partial cds.
EF591997 - Homo sapiens subject 9 clone 30 T-cell receptor beta chain mRNA, partial cds.
EF592000 - Homo sapiens clone 10532-42 T cell receptor mRNA, partial cds.
GQ502878 - Homo sapiens isolate 9 clone 37 T cell receptor beta chain mRNA, partial cds.
GQ502879 - Homo sapiens isolate 9 clone 42 T cell receptor beta chain mRNA, partial cds.
GQ502885 - Homo sapiens isolate 9 clone 66 T cell receptor beta chain mRNA, partial cds.
EF591999 - Homo sapiens subject 9 clone 41 T-cell receptor beta chain mRNA, partial cds.
GQ502874 - Homo sapiens isolate 5 clone L23 T cell receptor beta chain mRNA, partial cds.
EF591994 - Homo sapiens subject 9 clone 23 T-cell receptor beta chain mRNA, partial cds.
DQ875555 - Homo sapiens clone TCR2-1 T-cell receptor beta chain variable region mRNA, partial cds.
EF592023 - Homo sapiens subject 5 clone low 10 T-cell receptor beta chain mRNA, partial cds.
EF567072 - Homo sapiens patient 5491 clone W9 T-cell receptor beta chain (TRBV5.1) mRNA, partial cds.
GQ502871 - Homo sapiens isolate 5 clone H33 T cell receptor beta chain mRNA, partial cds.
GQ502880 - Homo sapiens isolate 9 clone 45 T cell receptor beta chain mRNA, partial cds.
AY848704 - Homo sapiens clone 3E11-1.2 T cell receptor beta chain variable region mRNA, partial cds.
AY848705 - Homo sapiens clone F7-3.2 T cell receptor beta chain variable region mRNA, partial cds.
AY848707 - Homo sapiens clone 4G5-10.6 T cell receptor beta chain variable region mRNA, partial cds.
KP676376 - Homo sapiens clone BC5 cl78 T cell receptor beta chain (TRB) mRNA, partial cds.
X01411 - H.sapiens mRNA fragment for T-cell receptor beta 2 chain V-J-C (HPB-ALL).
AF018168 - Homo sapiens T cell receptor beta chain (TCRB) mRNA, partial cds.
X86128 - H.sapiens mRNA for ood T lymphocyte.
AF041067 - Homo sapiens T cell receptor beta chain (TCRB) mRNA, partial cds.
AF009791 - Homo sapiens T cell receptor beta chain (TCRB) mRNA, partial cds.
KM004192 - Homo sapiens clone 167 T cell receptor beta mRNA, partial cds.
KM004195 - Homo sapiens clone 170 T cell receptor beta mRNA, partial cds.
KM004622 - Homo sapiens clone 597 T cell receptor beta mRNA, partial cds.
KM004648 - Homo sapiens clone 623 T cell receptor beta mRNA, partial cds.
KM004660 - Homo sapiens clone 635 T cell receptor beta mRNA, partial cds.
KM004721 - Homo sapiens clone 696 T cell receptor beta mRNA, partial cds.
MG789022 - Homo sapiens isolate Sample1_Cell14_11B3_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789190 - Homo sapiens isolate Sample1_Cell85_11H10_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789205 - Homo sapiens isolate Sample1_Cell91_12A5_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789222 - Homo sapiens isolate Sample1_Cell99_12B1_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789386 - Homo sapiens isolate Sample1_Cell173_12H7_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789458 - Homo sapiens isolate Sample1_Cell208_14D8_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789484 - Homo sapiens isolate Sample1_Cell220_15B7_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789501 - Homo sapiens isolate Sample1_Cell227_15E10_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789532 - Homo sapiens isolate Sample1_Cell239_16B8_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789881 - Homo sapiens isolate Sample2_Cell66_1F8_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789906 - Homo sapiens isolate Sample2_Cell76_1G7_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789995 - Homo sapiens isolate Sample2_Cell118_2C3_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790130 - Homo sapiens isolate Sample2_Cell178_2H6_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790148 - Homo sapiens isolate Sample2_Cell187_3A5_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790157 - Homo sapiens isolate Sample2_Cell191_3B3_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790304 - Homo sapiens isolate Sample3_Cell10_1A10_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790362 - Homo sapiens isolate Sample3_Cell35_1C11_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790387 - Homo sapiens isolate Sample3_Cell46_1D11_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790486 - Homo sapiens isolate Sample3_Cell92_2A1_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790501 - Homo sapiens isolate Sample3_Cell99_2A8_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790517 - Homo sapiens isolate Sample3_Cell105_2B2_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790560 - Homo sapiens isolate Sample3_Cell125_2C10_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790776 - Homo sapiens isolate Sample3_Cell217_4H3_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790809 - Homo sapiens isolate Sample3_Cell232_5E2_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790893 - Homo sapiens isolate Sample3_Cell271_7H7_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790932 - Homo sapiens isolate Sample3_Cell288_8H8_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790959 - Homo sapiens isolate Sample3_Cell300_9E8_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791015 - Homo sapiens isolate AA_Cell5_3A5_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791044 - Homo sapiens isolate AA_Cell18_3B6_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791067 - Homo sapiens isolate AA_Cell28_3C4_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791144 - Homo sapiens isolate AA_Cell62_3F3_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791169 - Homo sapiens isolate AA_Cell73_3G3_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791277 - Homo sapiens isolate AA_Cell121_4C6_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791336 - Homo sapiens isolate AA_Cell152_4F3_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791392 - Homo sapiens isolate AA_Cell180_4H9_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791508 - Homo sapiens isolate AA_Cell231_5E2_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791570 - Homo sapiens isolate AA_Cell260_5G10_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791583 - Homo sapiens isolate AA_Cell266_5H5_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791614 - Homo sapiens isolate AA_Cell281_6A11_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791627 - Homo sapiens isolate AA_Cell288_6B6_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791669 - Homo sapiens isolate AA_Cell308_6D2_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791758 - Homo sapiens isolate AA_Cell350_6G11_CDR3b T-cell receptor beta chain mRNA, partial sequence.
KM004171 - Homo sapiens clone 146 T cell receptor beta mRNA, partial cds.
KM004205 - Homo sapiens clone 180 T cell receptor beta mRNA, partial cds.
KM004245 - Homo sapiens clone 220 T cell receptor beta mRNA, partial cds.
KM004532 - Homo sapiens clone 507 T cell receptor beta mRNA, partial cds.
KM004533 - Homo sapiens clone 508 T cell receptor beta mRNA, partial cds.
KM004550 - Homo sapiens clone 525 T cell receptor beta mRNA, partial cds.
KM004584 - Homo sapiens clone 559 T cell receptor beta mRNA, partial cds.
KM004593 - Homo sapiens clone 568 T cell receptor beta mRNA, partial cds.
KM004603 - Homo sapiens clone 578 T cell receptor beta mRNA, partial cds.
KM004610 - Homo sapiens clone 585 T cell receptor beta mRNA, partial cds.
KM004618 - Homo sapiens clone 593 T cell receptor beta mRNA, partial cds.
KM004623 - Homo sapiens clone 598 T cell receptor beta mRNA, partial cds.
KM004624 - Homo sapiens clone 599 T cell receptor beta mRNA, partial cds.
KM004628 - Homo sapiens clone 603 T cell receptor beta mRNA, partial cds.
KM004638 - Homo sapiens clone 613 T cell receptor beta mRNA, partial cds.
KM004640 - Homo sapiens clone 615 T cell receptor beta mRNA, partial cds.
KM004642 - Homo sapiens clone 617 T cell receptor beta mRNA, partial cds.
KM004654 - Homo sapiens clone 629 T cell receptor beta mRNA, partial cds.
KM004683 - Homo sapiens clone 658 T cell receptor beta mRNA, partial cds.
KM004690 - Homo sapiens clone 665 T cell receptor beta mRNA, partial cds.
KM004700 - Homo sapiens clone 675 T cell receptor beta mRNA, partial cds.
KM004712 - Homo sapiens clone 687 T cell receptor beta mRNA, partial cds.
KM004715 - Homo sapiens clone 690 T cell receptor beta mRNA, partial cds.
KM004739 - Homo sapiens clone 714 T cell receptor beta mRNA, partial cds.
KM004741 - Homo sapiens clone 716 T cell receptor beta mRNA, partial cds.
KM004750 - Homo sapiens clone 725 T cell receptor beta mRNA, partial cds.
KM004752 - Homo sapiens clone 727 T cell receptor beta mRNA, partial cds.
KM004761 - Homo sapiens clone 736 T cell receptor beta mRNA, partial cds.
HM236512 - Homo sapiens isolate x025-21_b1_ms250_PLP TCR (CDR3) mRNA, partial cds.
HM236776 - Homo sapiens isolate x023-1_c5_H504_MBP TCR (CDR3) mRNA, partial cds.
HM467876 - Homo sapiens clone x023-5_c9_H504_PLP T cell receptor beta chain mRNA, partial cds.
GQ502883 - Homo sapiens isolate 9 clone 63 T cell receptor beta chain mRNA, partial cds.
AF020656 - Homo sapiens T cell receptor beta chain variable region (BV5S1A1T) mRNA, partial cds.
HM236673 - Homo sapiens isolate x025-5_a2_MS210_PLP TCR (CDR3) mRNA, partial cds.
HM467878 - Homo sapiens clone x023-5_e5_H504_PLP T cell receptor beta chain mRNA, partial cds.
HM236544 - Homo sapiens isolate x025-1_b5_ms210_MBP TCR (CDR3) mRNA, partial cds.
AY751887 - Homo sapiens isolate h548_A05 T cell receptor beta (TRBV) mRNA, partial cds.
AY751915 - Homo sapiens isolate 971.1_E002 T cell receptor beta (TCRBV) mRNA, partial cds.
HM236777 - Homo sapiens isolate x023-1_d4_H504_MBP TCR (CDR3) mRNA, partial cds.
HM467877 - Homo sapiens clone x023-5_c1_H504_PLP T cell receptor beta chain mRNA, partial cds.
EF592002 - Homo sapiens subject 9 clone 47 T-cell receptor beta chain mRNA, partial cds.
GQ502881 - Homo sapiens isolate 9 clone 48 T cell receptor beta chain mRNA, partial cds.
HM236515 - Homo sapiens isolate x025-21_e01_ms250_PLP TCR (CDR3) mRNA, partial cds.
JF731142 - Homo sapiens clone B14_BV_BV5S1.24_5 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731143 - Homo sapiens clone B14_BV_BV5S1.34_6 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731146 - Homo sapiens clone B14_BV_BV5S1.22_3 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731148 - Homo sapiens clone B14_BV_BV5S1.5_1 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731150 - Homo sapiens clone B14_BV_BV5S1.12_4 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731151 - Homo sapiens clone B14_BV_BV5S1.20_2 T cell receptor beta chain (TCRB) mRNA, partial cds.
HM236539 - Homo sapiens isolate x025-1_a5_ms210_MBP TCR-like (CDR3) mRNA, partial sequence.
JF731147 - Homo sapiens clone B14_BV_BV5S1.10_1 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731149 - Homo sapiens clone B14_BV_BV5S1.2_1 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731156 - Homo sapiens clone T10_TV_BV5S1.14_2 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731157 - Homo sapiens clone T10_TV_BV5S1.17_3 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731158 - Homo sapiens clone T10_TV_BV5S1.13_2 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731160 - Homo sapiens clone T10_TV_BV5S1.20_2 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731161 - Homo sapiens clone T10_TV_BV5S1.10_4 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731163 - Homo sapiens clone T10_TV_BV5S1.22_2 T cell receptor beta chain (TCRB) mRNA, partial cds.
AY751835 - Homo sapiens isolate 584.1_D06 T cell receptor beta (TRBV) mRNA, partial cds.
AF020654 - Homo sapiens T cell receptor beta chain variable region (BV5S1A1T) mRNA, partial cds.
MG791455 - Homo sapiens isolate AA_Cell206_5C1_CDR3b T-cell receptor beta chain mRNA, partial sequence.
KM004643 - Homo sapiens clone 618 T cell receptor beta mRNA, partial cds.
MG789040 - Homo sapiens isolate Sample1_Cell22_11B12_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789242 - Homo sapiens isolate Sample1_Cell108_12B11_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789546 - Homo sapiens isolate Sample1_Cell244_16D2_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789663 - Homo sapiens isolate Sample1_Cell296_19D12_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789778 - Homo sapiens isolate Sample2_Cell17_1B5_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790194 - Homo sapiens isolate Sample2_Cell208_4B5_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790306 - Homo sapiens isolate Sample3_Cell11_1A11_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790498 - Homo sapiens isolate Sample3_Cell98_2A7_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790530 - Homo sapiens isolate Sample3_Cell112_2B9_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790585 - Homo sapiens isolate Sample3_Cell137_2D10_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790592 - Homo sapiens isolate Sample3_Cell141_2E2_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790604 - Homo sapiens isolate Sample3_Cell145_2E7_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790621 - Homo sapiens isolate Sample3_Cell153_2F4_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790641 - Homo sapiens isolate Sample3_Cell161_2G1_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790662 - Homo sapiens isolate Sample3_Cell171_2G11_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790801 - Homo sapiens isolate Sample3_Cell228_5D1_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790831 - Homo sapiens isolate Sample3_Cell243_6B7_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790915 - Homo sapiens isolate Sample3_Cell280_8D3_CDR3b T-cell receptor beta chain mRNA, partial sequence.
KM004064 - Homo sapiens clone 39 T cell receptor beta mRNA, partial cds.
KM004596 - Homo sapiens clone 571 T cell receptor beta mRNA, partial cds.
KX077043 - Homo sapiens isolate SG_Subject8 clone 1270-8 T-cell receptor beta chain variable region (TRB) mRNA, partial cds.
KX076839 - Homo sapiens isolate SG_Subject9 clone 1066-9 T-cell receptor beta chain variable region (TRB) mRNA, partial cds.
KX074322 - Homo sapiens isolate PB_Subject1 clone 101-1 T-cell receptor beta chain variable region (TRB) mRNA, partial cds.
KX075171 - Homo sapiens isolate PB_Subject6 clone 950-6 T-cell receptor beta chain variable region (TRB) mRNA, partial cds.
KX077023 - Homo sapiens isolate SG_Subject10 clone 1250-10 T-cell receptor beta chain variable region (TRB) mRNA, partial cds.
JF731184 - Homo sapiens clone T19_TV_BV5S1.6_6 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731187 - Homo sapiens clone B38_BV_BV5S1.5_16 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731188 - Homo sapiens clone B38_BV_BV5S1.3_9 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731217 - Homo sapiens clone B38_CD8+CD28neg_BV5S1.18_7 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731219 - Homo sapiens clone B38_CD8+CD28neg_BV5S1.10_9 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731220 - Homo sapiens clone B46_CD8+CD28neg_BV5S1.13_9 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731228 - Homo sapiens clone B46_CD8+CD28+_BV5S1.12_6 T cell receptor beta chain (TCRB) mRNA, partial cds.
AF327910 - Homo sapiens T cell receptor beta chain mRNA, partial cds.
JF731164 - Homo sapiens clone T10_TV_BV5S1.12_5 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF731152 - Homo sapiens clone B14_BV_BV5S1.23_1 T cell receptor beta chain (TCRB) mRNA, partial cds.
HM236762 - Homo sapiens isolate x025-17_d6_MS250_MBP TCR-like (CDR3) mRNA, partial sequence.
KX075149 - Homo sapiens isolate PB_Subject3 clone 928-3 T-cell receptor beta chain variable region (TRB) mRNA, partial cds.
KX075380 - Homo sapiens isolate PB_Subject9 clone 1159-9 T-cell receptor beta chain variable region (TRB) mRNA, partial cds.
AY006191 - Homo sapiens clone pbmc522 T cell receptor beta chain mRNA, partial cds.
AY006197 - Homo sapiens clone pbmc533 T cell receptor beta chain mRNA, partial cds.
AY006332 - Homo sapiens clone 5bxVb518 T cell receptor beta chain mRNA, partial cds.
AY006189 - Homo sapiens clone pbmc510 T cell receptor beta chain mRNA, partial cds.
AY006321 - Homo sapiens clone 09npa50 T cell receptor beta chain mRNA, partial cds.
AY006177 - Homo sapiens clone pbmc503 T cell receptor beta chain mRNA, partial cds.
AY006196 - Homo sapiens clone pbmc501 T cell receptor beta chain mRNA, partial cds.
AY006324 - Homo sapiens clone 09npa72 T cell receptor beta chain mRNA, partial cds.
MK088533 - Homo sapiens clone A3003 T cell receptor beta chain (TRB) mRNA, TRB-V5-1*01 allele, partial cds.
MK088534 - Homo sapiens clone A3006 T cell receptor beta chain (TRB) mRNA, TRB-V5-1*01 allele, partial cds.
MK088536 - Homo sapiens clone A3013 T cell receptor beta chain (TRB) mRNA, TRB-V5-1*01 allele, partial cds.
MK088537 - Homo sapiens clone A4012 T cell receptor beta chain (TRB) mRNA, TRB-V5-1*01 allele, partial cds.
MK088554 - Homo sapiens clone E3001 T cell receptor beta chain (TRB) mRNA, TRB-V5-1*01 allele, partial cds.
MK088555 - Homo sapiens clone E3003 T cell receptor beta chain (TRB) mRNA, TRB-V5-1*01 allele, partial cds.
MK088557 - Homo sapiens clone E4001 T cell receptor beta chain (TRB) mRNA, TRB-V5-1*01 allele, partial cds.
MK088558 - Homo sapiens clone E4013 T cell receptor beta chain (TRB) mRNA, TRB-V5-1*01 allele, partial cds.
LP896467 - Sequence 1331 from Patent EP3253886.
AB305981 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 397.
AB305964 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 370.
AB305917 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 287.
AB749871 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: K_77_beta.
M97705 - Human T-cell receptor (V beta 5.1, J beta 1.5, C beta 1) mRNA.
AB749885 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: Q_69_beta.
AB306261 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: un 277.
AB305954 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 352.
AB749899 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: U_19_beta.
AB305818 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 40.
AB749851 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: I_18_beta.
AB305923 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 296.
AB305932 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 314.
AB306166 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: un 89.
AB306245 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: un 243.
AB749877 - Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone: Q_22_beta.
AB306137 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: un 24.
AB306190 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: un 135.
GQ502864 - Homo sapiens isolate 5491 clone W5 T cell receptor beta chain mRNA, partial cds.
KJ026959 - Homo sapiens isolate 1435 T cell receptor variable beta chain mRNA, partial cds.
M14271 - Homo sapiens T-cell receptor beta chain precursor (TCRB) mRNA, partial cds.
AB305829 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 78.
JF834315 - Homo sapiens clone 1332-28 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF834317 - Homo sapiens clone 1332-22 T cell receptor beta chain (TCRB) mRNA, partial cds.
JF834319 - Homo sapiens clone 1332-2 T cell receptor beta chain (TCRB) mRNA, partial cds.
M13849 - Human T-cell receptor active beta-chain (V5-D-J-C) mRNA, clone PL7.16.
AB305902 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 253.
S77831 - Homo sapiens T cell receptor beta chain variable region (TCRVbeta) mRNA, partial cds.
AB305912 - Homo sapiens mRNA for T cell receptor beta variable 5, partial cds, clone: SEB 277.
M13848 - Human T-cell receptor active beta-chain (V5-D-J-C) mRNA, clone PL4.16.
Z77833 - H.sapiens mRNA for TCR beta variable region (clone XPEC 29 I).
X92773 - H.sapiens mRNA for T cell receptor beta (clone XPHC5I).
S61991 - TcR beta =T-cell receptor beta chain V region {clone 2B5} [human, peripheral blood T cells, mRNA Partial, 81 nt].
DQ864993 - Homo sapiens T-cell receptor beta variable region mRNA, partial cds.
AY611537 - Homo sapiens clone 4-03 T-cell receptor beta chain variable region mRNA, partial cds.
AF071469 - Homo sapiens T cell receptor beta chain (TCRB) mRNA, V beta 5.1, D beta, J beta 1.2, C beta 1 allele, partial cds.
AY611539 - Homo sapiens clone 2-05 T-cell receptor beta chain variable region mRNA, partial cds.
MG789043 - Homo sapiens isolate Sample1_Cell23_11C1_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789575 - Homo sapiens isolate Sample1_Cell256_16H8_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790713 - Homo sapiens isolate Sample3_Cell192_3F2_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG790956 - Homo sapiens isolate Sample3_Cell299_9E2_CDR3b T-cell receptor beta chain mRNA, partial sequence.
DQ875563 - Homo sapiens clone TCR3-2 T-cell receptor beta chain variable region mRNA, partial cds.
MG791200 - Homo sapiens isolate AA_Cell85_3H4_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789211 - Homo sapiens isolate Sample1_Cell94_12A8_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG791017 - Homo sapiens isolate AA_Cell6_3A6_CDR3b T-cell receptor beta chain mRNA, partial sequence.
MG789827 - Homo sapiens isolate Sample2_Cell41_1D5_CDR3b T-cell receptor beta chain mRNA, partial sequence.
AF395795 - Homo sapiens clone 50 T cell receptor beta chain mRNA, partial cds.
AF325867 - Homo sapiens T cell receptor beta chain mRNA, partial cds.
HM236674 - Homo sapiens isolate x025-5_f03_MS210_PLP TCR (CDR3) mRNA, partial cds.
HM467875 - Homo sapiens clone x023-5_a10_H504_PLP T cell receptor beta chain mRNA, partial cds.
AY611551 - Homo sapiens clone 1-AA1 T-cell receptor beta chain variable region mRNA, partial cds.
AY751843 - Homo sapiens isolate 971.1_A001 T cell receptor beta (TRBV) mRNA, partial cds.
HM236514 - Homo sapiens isolate x025-21_g11_ms250_PLP TCR (CDR3) mRNA, partial cds.
HM236718 - Homo sapiens isolate x025-18_c10_MS250_MBP TCR (CDR3) mRNA, partial cds.
HM236510 - Homo sapiens isolate x025-21_e04_ms250_PLP TCR (CDR3) mRNA, partial cds.
HM236615 - Homo sapiens isolate s124-14_b01_H267_MBP TCR (CDR3) mRNA, partial cds.
HM236635 - Homo sapiens isolate s124-14_e05_H267_MBP TCR (CDR3) mRNA, partial cds.
HM236642 - Homo sapiens isolate s124-14_c08_H267_MBP TCR (CDR3) mRNA, partial cds.
HM236659 - Homo sapiens isolate s124-14_a12_H267_MBP TCR (CDR3) mRNA, partial cds.
HM236662 - Homo sapiens isolate s124-14_c12_H267_MBP TCR (CDR3) mRNA, partial cds.
HM236807 - Homo sapiens isolate x023-2_c4_H504_MBP TCR (CDR3) mRNA, partial cds.
HM236676 - Homo sapiens isolate x025-5_d5_MS210_PLP TCR (CDR3) mRNA, partial cds.
HM467843 - Homo sapiens clone s124-38_f11_MS971_MBP T cell receptor beta chain mRNA, partial cds.
HM467856 - Homo sapiens clone s124-38_e112_MS971_MBP T cell receptor beta chain mRNA, partial cds.
HM236508 - Homo sapiens isolate x025-21_b8_ms250_PLP TCR (CDR3) mRNA, partial cds.
DQ473364 - Homo sapiens T cell receptor beta chain variable region (TRBV5-1) mRNA, TRBV5-1*02 allele, partial cds.
DQ473367 - Homo sapiens T cell receptor beta chain variable region (TRBV5-1) mRNA, TRBV5-1*02 allele, partial cds.
HM236509 - Homo sapiens isolate x025-21_a12_ms250_PLP TCR (CDR3) mRNA, partial cds.
HM236541 - Homo sapiens isolate x025-1_b7_ms210_MBP TCR (CDR3) mRNA, partial cds.
HM467844 - Homo sapiens clone s124-38_f12_MS971_MBP T cell receptor beta chain mRNA, partial cds.
HM467852 - Homo sapiens clone s124-38_a112_MS971_MBP T cell receptor beta chain mRNA, partial cds.
HM467855 - Homo sapiens clone s124-38_e111_MS971_MBP T cell receptor beta chain mRNA, partial cds.
HM467860 - Homo sapiens clone s124-38_h111_MS971_MBP T cell receptor beta chain mRNA, partial cds.
AY751921 - Homo sapiens isolate 971.2_B005 T cell receptor beta (TCRBV) mRNA, partial cds.
S64081 - TCR V beta 5+=T-cell receptor VDJ beta {clone BDB 2-23} [human, allospecific T-cells, mRNA Partial, 137 nt].
MK088535 - Homo sapiens clone A3012 T cell receptor beta chain (TRB) mRNA, TRB-V5-1*01 allele, partial cds.
LR800295 - Homo Sapiens mRNA for T-cell receptor beta chain (TRB gene), clone HA-1H Donor B TRBV5-1*01.
LR800299 - Homo Sapiens mRNA for T-cell receptor beta chain (TRB gene), clone HA-1H Donor B TRBV5-1*01.
LR800297 - Homo Sapiens mRNA for T-cell receptor beta chain (TRB gene), clone HA-1H Donor B TRBV5-1*01.
LR800296 - Homo Sapiens mRNA for T-cell receptor beta chain (TRB gene), clone HA-1H Donor B TRBV5-1*01.
LR800298 - Homo Sapiens mRNA for T-cell receptor beta chain (TRB gene), clone HA-1H Donor B TRBV5-1*01.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A578, A0A578_HUMAN, TCRBV5S1A1T, X58328
UCSC ID: uc011krr.1
Representative RNA: X58328
Protein: A0A578

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: X58328.1
exon count: 3CDS single in 3' UTR: no RNA size: 399
ORF size: 354CDS single in intron: no Alignment % ID: 99.50
txCdsPredict score: 808.00frame shift in genome: no % Coverage: 88.72
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.