Human Gene RSRC2 (uc001ucr.3)
Description: Homo sapiens arginine/serine-rich coiled-coil 2 (RSRC2), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr12:122,989,190-123,011,560 Size: 22,371 Total Exon Count: 10 Strand: -
Coding Region
Position: hg19 chr12:122,990,074-123,011,400 Size: 21,327 Coding Exon Count: 10
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: RSRC2_HUMAN
DESCRIPTION: RecName: Full=Arginine/serine-rich coiled-coil protein 2;
SIMILARITY: Belongs to the RSRC2 family.SEQUENCE CAUTION: Sequence=BAB14755.1; Type=Erroneous initiation; Sequence=EAW98327.1; Type=Erroneous gene model prediction;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR026760 - RSRC2
Pfam Domains: PF15477 - Small acidic protein family
ModBase Predicted Comparative 3D Structure on Q7L4I2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC067773 - Homo sapiens arginine/serine-rich coiled-coil 2, mRNA (cDNA clone MGC:87110 IMAGE:5301415), complete cds.AB212664 - Homo sapiens mRNA for hypothetical protein, complete cds.BC008684 - Homo sapiens arginine/serine-rich coiled-coil 2, mRNA (cDNA clone MGC:9742 IMAGE:3853928), complete cds.BX640711 - Homo sapiens mRNA; cDNA DKFZp686P16221 (from clone DKFZp686P16221).BX647884 - Homo sapiens mRNA; cDNA DKFZp686E04101 (from clone DKFZp686E04101).AK023985 - Homo sapiens cDNA FLJ13923 fis, clone Y79AA1000539.AK056114 - Homo sapiens cDNA FLJ31552 fis, clone NT2RI2001091, weakly similar to SPLICING FACTOR, ARGININE/SERINE-RICH 4.AK094465 - Homo sapiens cDNA FLJ37146 fis, clone BRACE2024826, weakly similar to H.sapiens PR264 mRNA.HM245396 - Homo sapiens MIER2-RSRC2 breakpoint junction mRNA sequence.JD156429 - Sequence 137453 from Patent EP1572962.AK001883 - Homo sapiens cDNA FLJ11021 fis, clone PLACE1003704, weakly similar to SPLICING FACTOR, ARGININE/SERINE-RICH 4.JD287254 - Sequence 268278 from Patent EP1572962.JD499807 - Sequence 480831 from Patent EP1572962.CU679039 - Synthetic construct Homo sapiens gateway clone IMAGE:100018559 5' read RSRC2 mRNA.AF161432 - Homo sapiens HSPC314 mRNA, partial cds.AK056256 - Homo sapiens cDNA FLJ31694 fis, clone NT2RI2005723, weakly similar to SPLICING FACTOR, ARGININE/SERINE-RICH 4.JD369899 - Sequence 350923 from Patent EP1572962.JD248288 - Sequence 229312 from Patent EP1572962.JD394628 - Sequence 375652 from Patent EP1572962.JD310292 - Sequence 291316 from Patent EP1572962.JD241550 - Sequence 222574 from Patent EP1572962.JD332079 - Sequence 313103 from Patent EP1572962.JD138237 - Sequence 119261 from Patent EP1572962.JD139363 - Sequence 120387 from Patent EP1572962.JD108439 - Sequence 89463 from Patent EP1572962.JD257434 - Sequence 238458 from Patent EP1572962.JD546165 - Sequence 527189 from Patent EP1572962.JD263352 - Sequence 244376 from Patent EP1572962.JD238737 - Sequence 219761 from Patent EP1572962.JD168859 - Sequence 149883 from Patent EP1572962.JD139352 - Sequence 120376 from Patent EP1572962.JD043643 - Sequence 24667 from Patent EP1572962.JD504877 - Sequence 485901 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: NM_023012, NP_075388, Q6N040, Q6NW16, Q7L4I2, Q9H864, RSRC2_HUMANUCSC ID: uc001ucr.3RefSeq Accession: NM_023012
Protein: Q7L4I2
(aka RSRC2_HUMAN)
CCDS: CCDS31920.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_023012.5
exon count:
10 CDS single in 3' UTR:
no
RNA size:
2349
ORF size:
1305 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2303.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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