The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Descriptions from all associated GenBank mRNAs
KJ901166 - Synthetic construct Homo sapiens clone ccsbBroadEn_10560 ZNF295-AS1 gene, encodes complete protein. BC061917 - Homo sapiens cDNA clone IMAGE:4365526, partial cds. JD305366 - Sequence 286390 from Patent EP1572962. AK055167 - Homo sapiens cDNA FLJ30605 fis, clone CTONG2000303. BC029588 - Homo sapiens chromosome 21 open reading frame 121, mRNA (cDNA clone IMAGE:5271985). JD270765 - Sequence 251789 from Patent EP1572962. JD484891 - Sequence 465915 from Patent EP1572962. JD246759 - Sequence 227783 from Patent EP1572962. JD430914 - Sequence 411938 from Patent EP1572962. JD430915 - Sequence 411939 from Patent EP1572962. JD558730 - Sequence 539754 from Patent EP1572962. JD558731 - Sequence 539755 from Patent EP1572962. JD442906 - Sequence 423930 from Patent EP1572962. JD195166 - Sequence 176190 from Patent EP1572962. JD195167 - Sequence 176191 from Patent EP1572962. JD326905 - Sequence 307929 from Patent EP1572962. JD430901 - Sequence 411925 from Patent EP1572962. JD558719 - Sequence 539743 from Patent EP1572962. JD335279 - Sequence 316303 from Patent EP1572962. JD253183 - Sequence 234207 from Patent EP1572962. DQ591075 - Homo sapiens piRNA piR-58187, complete sequence. JD096924 - Sequence 77948 from Patent EP1572962. JD116507 - Sequence 97531 from Patent EP1572962.