Human Gene ZNF295-AS1 (uc011aeu.1)
  Description: Homo sapiens cDNA FLJ30605 fis, clone CTONG2000303.
Transcript (Including UTRs)
   Position: hg19 chr21:43,442,113-43,445,060 Size: 2,948 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr21:43,442,244-43,442,522 Size: 279 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:43,442,113-43,445,060)mRNA (may differ from genome)Protein (92 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
GeneCardsHGNCLynxMGIPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.45 RPKM in Testis
Total median expression: 11.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -45.60131-0.348 Picture PostScript Text
3' UTR -981.992538-0.387 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  KJ901166 - Synthetic construct Homo sapiens clone ccsbBroadEn_10560 ZNF295-AS1 gene, encodes complete protein.
BC061917 - Homo sapiens cDNA clone IMAGE:4365526, partial cds.
JD305366 - Sequence 286390 from Patent EP1572962.
AK055167 - Homo sapiens cDNA FLJ30605 fis, clone CTONG2000303.
BC029588 - Homo sapiens chromosome 21 open reading frame 121, mRNA (cDNA clone IMAGE:5271985).
JD270765 - Sequence 251789 from Patent EP1572962.
JD484891 - Sequence 465915 from Patent EP1572962.
JD246759 - Sequence 227783 from Patent EP1572962.
JD430914 - Sequence 411938 from Patent EP1572962.
JD430915 - Sequence 411939 from Patent EP1572962.
JD558730 - Sequence 539754 from Patent EP1572962.
JD558731 - Sequence 539755 from Patent EP1572962.
JD442906 - Sequence 423930 from Patent EP1572962.
JD195166 - Sequence 176190 from Patent EP1572962.
JD195167 - Sequence 176191 from Patent EP1572962.
JD326905 - Sequence 307929 from Patent EP1572962.
JD430901 - Sequence 411925 from Patent EP1572962.
JD558719 - Sequence 539743 from Patent EP1572962.
JD335279 - Sequence 316303 from Patent EP1572962.
JD253183 - Sequence 234207 from Patent EP1572962.
DQ591075 - Homo sapiens piRNA piR-58187, complete sequence.
JD096924 - Sequence 77948 from Patent EP1572962.
JD116507 - Sequence 97531 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_027273
UCSC ID: uc011aeu.1
Representative RNA: NR_027273

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_027273.1
exon count: 1CDS single in 3' UTR: no RNA size: 1073
ORF size: 279CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 726.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.