Human Gene MYADML (uc002rpb.3)
Description: Homo sapiens myeloid-associated differentiation marker-like (pseudogene) (MYADML), non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr2:33,951,128-33,953,284 Size: 2,157 Total Exon Count: 1 Strand: -
Coding Region
Position: hg19 chr2:33,952,105-33,952,842 Size: 738 Coding Exon Count: 1
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): MYADML
CDC HuGE Published Literature: MYADML
Positive Disease Associations: hypertension (young onset)
, Lipoproteins, LDL
Related Studies: hypertension (young onset) Yang ,et al. 2009, Genome-wide association study of young-onset hypertension in the Han Chinese population of Taiwan, PloS one 2009 4- 5 : e5459.
[PubMed 19421330 ]
Lipoproteins, LDL , , .
[PubMed 0 ]
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR008253 - Marvel
IPR021128 - MARVEL-like_dom
Pfam Domains: PF01284 - Membrane-associating domain
ModBase Predicted Comparative 3D Structure on Q53R84
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC031088 - Homo sapiens myeloid-associated differentiation marker-like, mRNA (cDNA clone IMAGE:5297847).AK057470 - Homo sapiens cDNA FLJ32908 fis, clone TESTI2005860, moderately similar to MYELOID UPREGULATED PROTEIN.JD328009 - Sequence 309033 from Patent EP1572962.JD185533 - Sequence 166557 from Patent EP1572962.JD523238 - Sequence 504262 from Patent EP1572962.JD172937 - Sequence 153961 from Patent EP1572962.BC038980 - Homo sapiens myeloid-associated differentiation marker-like, mRNA (cDNA clone IMAGE:5742332).JD344428 - Sequence 325452 from Patent EP1572962.JD298336 - Sequence 279360 from Patent EP1572962.JD127282 - Sequence 108306 from Patent EP1572962.JD506649 - Sequence 487673 from Patent EP1572962.JD347607 - Sequence 328631 from Patent EP1572962.JD189647 - Sequence 170671 from Patent EP1572962.JD467347 - Sequence 448371 from Patent EP1572962.JD097553 - Sequence 78577 from Patent EP1572962.JD484008 - Sequence 465032 from Patent EP1572962.JD392542 - Sequence 373566 from Patent EP1572962.JD391563 - Sequence 372587 from Patent EP1572962.JD256265 - Sequence 237289 from Patent EP1572962.JD299785 - Sequence 280809 from Patent EP1572962.JD528141 - Sequence 509165 from Patent EP1572962.JD556608 - Sequence 537632 from Patent EP1572962.JD500997 - Sequence 482021 from Patent EP1572962.JD253563 - Sequence 234587 from Patent EP1572962.JD131106 - Sequence 112130 from Patent EP1572962.JD153916 - Sequence 134940 from Patent EP1572962.JD133393 - Sequence 114417 from Patent EP1572962.JD300084 - Sequence 281108 from Patent EP1572962.JD545353 - Sequence 526377 from Patent EP1572962.JD180405 - Sequence 161429 from Patent EP1572962.JD293796 - Sequence 274820 from Patent EP1572962.JD390245 - Sequence 371269 from Patent EP1572962.JD273856 - Sequence 254880 from Patent EP1572962.JD550986 - Sequence 532010 from Patent EP1572962.JD146285 - Sequence 127309 from Patent EP1572962.JD227112 - Sequence 208136 from Patent EP1572962.JD323734 - Sequence 304758 from Patent EP1572962.JD484927 - Sequence 465951 from Patent EP1572962.JD290122 - Sequence 271146 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: NR_003143, Q53R84, Q53R84_HUMAN, tmp_locus_39UCSC ID: uc002rpb.3RefSeq Accession: NR_003143
Protein: Q53R84
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NR_003143.2
exon count:
1 CDS single in 3' UTR:
no
RNA size:
2172
ORF size:
738 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1415.00 frame shift in genome:
no
% Coverage:
99.31
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.